Enterobacter roggenkampii DSM 16690: BFV67_00420
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Entry
BFV67_00420 CDS
T05556
Name
(GenBank) DNA ligase B
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ern
Enterobacter roggenkampii DSM 16690
Pathway
ern03030
DNA replication
ern03410
Base excision repair
ern03420
Nucleotide excision repair
ern03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ern00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BFV67_00420
03410 Base excision repair
BFV67_00420
03420 Nucleotide excision repair
BFV67_00420
03430 Mismatch repair
BFV67_00420
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ern03032
]
BFV67_00420
03400 DNA repair and recombination proteins [BR:
ern03400
]
BFV67_00420
Enzymes [BR:
ern01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BFV67_00420
DNA replication proteins [BR:
ern03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BFV67_00420
DNA repair and recombination proteins [BR:
ern03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BFV67_00420
NER (nucleotide excision repair)
GGR (global genome repair) factors
BFV67_00420
MMR (mismatch excision repair)
DNA ligase
BFV67_00420
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BFV67_00420
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
DUF3701
Motif
Other DBs
NCBI-ProteinID:
AOP93715
LinkDB
All DBs
Position
99600..101270
Genome browser
AA seq
556 aa
AA seq
DB search
MWRWISGLMLLWSGYGAAVCPVWSQAKAEKEMASLSAQIKRWDDAYWKQGVSEVNDEVYD
QLNGRLMQWQHCFGSEPSEEKLPALVGSVKHPVAHTGVHKVASKEELRQWMRARQHLWMQ
PKVDGVAVTLVYRDGTLTQAISRGDGLKGEDWTGKVRLIPTIPQKLTGKLANSVLQGELF
WLSDNHIQRQMGGMNARAKVAGAMMRQKDNSVLSKIGVFIWAWPDGPKDMQTSLAELSQA
GFTLSARYTLPADSVDAVEKQRAAWHVTGLPFATDGIVVRSEDAPAGEGWLPGEGNWLVA
WKYAPAAQVTEVSDIHFSVGRTGKMSVVAALEPVQLDDKQVRRVSLGSVERWQRLDIASG
DQIQVSLAGQGIPRFDKVVWRGTDRHKPEPPASRYHALSCFYASPECMEQFFARLTWLSS
KQVLDIEGLGESGWRTLWQAHHFEHLFSWLLLTQAQMQATPGFSSARGLALWHRFNLVRE
KPFIRWLMALGVPLTQASLKAMGNVTWQTLSGRNAKDWQSLPGTGERKARQIVAFIHDPG
VAGLASWLGKQGLPGF
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atgtggcgatggataagcgggttaatgctcttgtggagtggctatggcgcggcggtgtgc
ccggtgtggtcgcaggcaaaagctgagaaagagatggcgtcgttaagcgcgcaaatcaaa
cgctgggatgacgcttactggaagcagggcgtgagcgaggtcaacgacgaagtttacgac
cagcttaacgggcgcttaatgcagtggcagcactgttttggcagtgagccttcagaggag
aaactccctgcgctggtgggaagcgtaaaacatcctgttgcccatacgggcgtacataaa
gtggccagcaaagaggagttgagacagtggatgcgtgcgcggcagcatctgtggatgcag
cccaaagttgacggtgtggcggtaacgctggtctatcgtgacggaacgttaacccaggcc
atcagtcgtggtgatggcctgaaaggggaagactggaccgggaaggtgcgtttgatcccg
actattccgcaaaagctcaccggcaagctcgcgaacagcgtcttacagggcgagcttttc
tggctaagcgacaatcacattcagcggcagatgggcgggatgaacgctcgcgcaaaggtg
gcgggggcgatgatgcggcaaaaggataactcggttttgagcaagatcggcgtgttcatc
tgggcctggccggatgggccgaaagatatgcagacatctttagctgaactgtctcaggcc
ggttttacgctgtcggcacggtatacgctacccgccgattctgttgatgccgtcgagaaa
cagcgcgccgcctggcacgtaaccggattaccctttgccacggatggaattgtggtgcgt
tcggaggatgcgcccgcaggggaaggctggttaccgggcgaaggcaactggctggttgcg
tggaaatatgcgcctgcagcccaggtgaccgaggtgagtgatattcatttttccgtgggg
cgaacgggcaaaatgtccgttgtagccgcactggaacctgtgcaattggacgataaacag
gtacggcgggtgagtctgggctcggtggagcgctggcagaggctggatattgcctcaggg
gatcagatacaggtcagcctggccgggcagggtattccccggtttgataaggtggtctgg
cgcgggacggacagacataaacccgagcctccagcctcgcgttatcatgcgctgagctgt
ttctatgcttctccggaatgtatggaacagttctttgcccgactgacctggctcagctca
aagcaggtacttgatattgaaggattaggcgagtcaggctggcgcaccctctggcaggca
catcattttgaacacctcttttcgtggctgttattaacgcaggcgcaaatgcaggctacg
cctggcttttcctccgcgcgcgggctggcgctctggcatcgatttaatctggtgcgcgag
aagccatttatccgctggctcatggcattgggtgttccgctgacacaggcttcgctgaag
gcgatggggaacgtaacgtggcagacgttgagcggacgtaacgcaaaggactggcaaagc
ctgccgggaacgggagagaggaaggcgcgacaaattgttgccttcatccacgaccctggc
gttgccgggctggcatcctggttaggcaagcagggtctgcctggattttag
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