Erwinia rhapontici: LJN55_16825
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Entry
LJN55_16825 CDS
T08392
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
erp
Erwinia rhapontici
Pathway
erp03030
DNA replication
erp03410
Base excision repair
erp03420
Nucleotide excision repair
erp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
erp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LJN55_16825 (ligA)
03410 Base excision repair
LJN55_16825 (ligA)
03420 Nucleotide excision repair
LJN55_16825 (ligA)
03430 Mismatch repair
LJN55_16825 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
erp03032
]
LJN55_16825 (ligA)
03400 DNA repair and recombination proteins [BR:
erp03400
]
LJN55_16825 (ligA)
Enzymes [BR:
erp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LJN55_16825 (ligA)
DNA replication proteins [BR:
erp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LJN55_16825 (ligA)
DNA repair and recombination proteins [BR:
erp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LJN55_16825 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LJN55_16825 (ligA)
MMR (mismatch excision repair)
DNA ligase
LJN55_16825 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LJN55_16825 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
S-Me-THD_N
Ned1_M
Prok-E2_C
MazE_antitoxin
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
UDQ79109
LinkDB
All DBs
Position
complement(3626839..3628851)
Genome browser
AA seq
670 aa
AA seq
DB search
MESVQNKITHLRTLLRHHEHQYHVLDAPEVPDAEYDRLMGELRELETAHPELITADSPTQ
RVGAAPLAAFDQVRHEVPMLSLDNAFDEESYLAFDKRVKDRLKNSDDITFCCELKLDGLA
VSLLYENGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPARMEVRGEVFMPLAG
FEKMNDEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEMPRSHW
GRLQQFKAWGLPVSDRVRLCHNADEVLTFYREVETARPTLGFDIDGVVIKVDSLDRQEQL
GFVARAPRWAIAFKFPAQEQMTVVRDVEFQVGRTGAITPVARLEPVLVAGVIVSNATLHN
ADEIERLGLKIGDRVVIRRAGDVIPKVVSVVDHAEDARDVVFPGQCPVCGSDVERVEGEV
VARCTGGLICGAQRKGALKHFVSRRALDIDGMGEKIIDQLVDKEYVLNPADLFDLTAGKL
TGLDRMGPKSAQNVVDALAKAKQTTFARFLYALGISEVGEATAANLAAHFGTLEALMAAD
LEALIAVPDVGKVVASHVRNFLDEESNREVIRLLVEKAGISWPDVVVVKAEEIDSPFAGK
TVVLTGSLTVLSRDEAKDRLAALGAKVSGSVSKKTDLVIAGEAAGSKLVKAQELGIPVID
EAEMIRLLGE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaatccgtacaaaacaaaatcacccatttgcgaaccctgcttcgccaccatgaacat
cagtatcacgtactggatgcaccggaagtgccggatgcggagtacgatcgcctgatgggt
gaactgcgtgagctggaaacggctcatccggagctgataaccgctgattcacccacccag
cgcgttggcgctgcaccgctggcggcttttgatcaggtgcgccacgaagtgccgatgttg
tcgctggataatgctttcgatgaagagagctacctggcattcgataagcgtgtgaaagat
cgtctgaaaaacagcgatgacatcaccttctgctgtgagctgaaactggatgggctggcg
gtcagcctgctgtatgaaaacggtgagctggtgcgtgcagcaacgcgtggcgatggcacc
acgggtgaaaatatcacggctaacgtgcgcaccattcgcgccatcccgttgcgtctcagc
ggtgacaatattccggcgcgcatggaagtgcgcggtgaagtgtttatgccgctggccggt
tttgaaaaaatgaacgacgaagcgcgccgtaccgggagtaaggtctttgctaacccgcgt
aacgctgctgcgggctctttgcgtcagcttgacccgcgtattaccgccaaacgcccgctg
acgttcttctgttacggcctcgggctgctggaagggggcgagatgccgcgtagccattgg
gggcgcctgcaacagtttaaagcctggggtttaccggtcagcgaccgcgtgcgcctgtgc
cataacgccgatgaagtgctgaccttttaccgtgaagtagaaaccgctcgcccaacgctg
ggttttgatattgatggcgtggtgatcaaagtggattcgctggatcgccaggaacagctg
ggctttgttgcccgcgcaccccgctgggcgatcgcctttaaattccccgctcaggagcag
atgacggtcgtgcgtgacgttgagttccaggtggggcgtaccggggcgattaccccggta
gcccgactggagccggtgctggtggccggggttatcgtcagcaatgccacgttgcacaac
gctgacgagattgaacggctggggctgaagatcggcgatcgcgtggtgatccgccgcgcg
ggtgatgtgatcccgaaagtggtcagcgtggtcgatcacgcggaagatgcccgtgacgta
gtgtttcctggccaatgtccggtctgtggttccgacgttgagcgcgtggagggcgaggtg
gttgctcgctgcacgggcggcctgatctgtggcgcacagcgcaaaggcgcgttaaaacac
tttgtctcgcgtcgggcactggatatcgacggaatgggcgaaaagattatcgaccagttg
gtggataaagagtacgtcctgaacccggccgacctgttcgatctgacggcgggtaaactg
accgggctggatcgtatggggccgaaatcggcacagaatgtggtagatgcgctggcgaaa
gcgaagcagaccacctttgcccgcttcctgtatgccctgggcatcagtgaagtcggtgag
gcgacggcggctaacctggcagcgcattttggtacgctggaggcgctgatggcggcggat
ctggaggcattgattgccgtgccggatgtcggcaaagtggtggccagccacgtgcggaac
ttcctggatgaagagagtaaccgtgaagtgatccgcctgctggtggagaaagccggtata
agctggcctgacgttgtggtcgtgaaagcggaagagatcgatagcccatttgccgggaaa
accgtggtactgaccggttcactgaccgttctttcgcgtgatgaagccaaagaccgcctg
gcggcgctcggcgcgaaagtgagtggcagcgtgtcgaagaaaacggatctggtgatcgcc
ggagaggccgcaggctccaagctggttaaagcgcaggaactgggtatcccggtgatcgac
gaagcggaaatgatacgtttactgggtgaatga
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