Erythrobacter sp. BLCC-B19: PS060_12975
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Entry
PS060_12975 CDS
T10682
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
erq Erythrobacter sp. BLCC-B19
Pathway
erq03030
DNA replication
erq03410
Base excision repair
erq03420
Nucleotide excision repair
erq03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
erq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PS060_12975 (ligA)
03410 Base excision repair
PS060_12975 (ligA)
03420 Nucleotide excision repair
PS060_12975 (ligA)
03430 Mismatch repair
PS060_12975 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
erq03032
]
PS060_12975 (ligA)
03400 DNA repair and recombination proteins [BR:
erq03400
]
PS060_12975 (ligA)
Enzymes [BR:
erq01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PS060_12975 (ligA)
DNA replication proteins [BR:
erq03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PS060_12975 (ligA)
DNA repair and recombination proteins [BR:
erq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PS060_12975 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PS060_12975 (ligA)
MMR (mismatch excision repair)
DNA ligase
PS060_12975 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PS060_12975 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
WDA40468
LinkDB
All DBs
Position
2774983..2777091
Genome browser
AA seq
702 aa
AA seq
DB search
MGIEGLSEADAANELMRLARQIAHHDRLYHAEDSPEITDAEYDALVRRNAALEAAFPHLI
REDSPSRKVGHQIAASPLGKVVHEVRMMSLDNAFSPQEVAEWLARMRRFLNLPDDAPLAC
TAEDKIDGLSCSLRYENGKLVRAATRGDGQVGEDVTANVAHIPDIPQQLPAGVPQVFEVR
GEVYMEKQAFAALNAAQQEVGGKLFANPRNAAAGSLRQKDASVTAKRPLRFWAHGWGAAS
AVPGATQSEVVAKLREWGFPVSPLFVTIEGGADELVAHFDAIGAARPGLAYDIDGVVYKL
DRLDWQERLGFVAKAPRWALAHKFPAERAETTVEAIDIQVGRTGKLTPVGRLAPVLVGGV
TVTNVTLHNRDEIARLGLRVGDRVVIQRAGDVIPQVVENLTREEERPAFAFPDHCPECGS
EAVAEEGEVDVRCTGGLICPAQRTQRLEHFVSRKALDIEGLGEKTIAQFFALGWLESPAD
IFRLKERRANILGLEGWQEKSVDNLLAAIEAKRTPDAARLLFALGIRHVGEVTARDLMKH
FHELPRIREAAEYLNKWFRAEGGARLKPPKDDDRYLAFISIDGVGDAVVESFRDFFHEPH
NVAVWDDLLSQVTPPRYEVKTVASRVAGKTVVFTGKLETMSRDEAKAQAERLGAKAAGSV
SAKTDLLVAGPGAGSKLKKAAELGIEVTDEAGWAAIVAEALG
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
atgggaatcgaaggactgtccgaggcggatgccgccaatgaactgatgcggcttgcccgt
cagatcgcgcaccatgaccggctctatcacgccgaagacagtcccgagatcaccgatgcc
gaatatgacgcgctggtgcgccgcaatgccgcgctggaggcggccttcccgcacctgatc
cgcgaggattcgccatcgcgcaaggtcggccaccagatcgccgcctcgccgctcggcaag
gtggtgcatgaggttcggatgatgagcctcgacaatgccttctctccgcaggaggtggcc
gaatggcttgcgcggatgcggcgcttcctcaacctacccgacgatgccccgctcgcctgc
acggcggaggacaagatcgacggcctgtcctgctcgctccgctacgagaacggcaagctg
gtgcgcgccgccacgcgcggcgatgggcaggtgggcgaggacgtgacggcgaacgttgcg
catatccccgacatcccgcagcagctccccgctggcgtgccgcaagtgttcgaggtgcgc
ggcgaagtctatatggaaaaacaggcctttgctgcactcaatgctgcgcagcaagaggta
ggcggcaagctgtttgccaacccgcgcaatgccgctgccggatcgctgcgtcagaaggat
gcgagcgtcacggccaagcgccccttgcggttctgggcgcatggctggggcgcggcgtcg
gcggtgccgggagcaacgcagagcgaggtggtggcaaagctccgcgaatggggtttcccg
gtctcgccgctgttcgtgacgatcgagggcggggcagacgaactggtcgcgcacttcgat
gccatcggtgccgcgcgtccgggccttgcctatgatatcgacggggtcgtctacaagctc
gaccggctcgactggcaggagcgtctcggcttcgtggcgaaagccccgcgctgggcgctg
gcgcacaagttcccggctgaacgcgcggaaacgacggttgaagccatcgacattcaggtg
ggccgcaccggcaagctcacgcccgtgggccgcctcgcgccggtgctggtcggcggggtg
acggtgaccaatgtcacgcttcacaaccgcgacgagattgcgcgtcttggcctgagggtc
ggcgaccgcgtggtgatccagcgcgcgggcgatgtgatcccgcaggtggtcgagaacctg
acgcgggaggaggaacgccccgctttcgcgttccccgatcattgccccgaatgcgggtcg
gaagcggtcgccgaggaaggcgaggtcgatgtacgctgcaccggcgggctgatctgcccg
gcgcagcgcacccagcggctcgaacatttcgtcagccgcaaggccttggacatcgagggg
ctgggcgagaagaccatcgcgcagttcttcgcgctcgggtggctggaaagcccggcggat
atcttccggctgaaggaacgccgcgcaaacattctcggccttgaaggctggcaggagaag
tcggtcgataatcttctcgccgcgatcgaggccaagcgcacgcccgatgccgcgcggctg
ctcttcgcgctcggtatccggcacgtgggcgaggtcacggcgcgcgatctgatgaagcat
tttcacgagcttccgagaattcgcgaggcggctgaatacttgaacaagtggttccgggcg
gaaggcggcgctcgcctcaagcccccgaaagatgatgacagatacctcgccttcatttcg
attgatggcgtgggcgatgcggtggtggagtcgttccgagacttctttcacgaaccgcac
aacgttgccgtctgggacgatctgctcagccaggtcaccccgccgcgctatgaggtcaag
accgtcgcctctcgcgtcgcgggcaagaccgtggtgttcaccggcaagcttgaaaccatg
agccgcgacgaggccaaggcgcaggccgaacgcctgggcgcgaaggcggcggggagcgtt
tcggccaagaccgatctgctggtcgccgggccgggggcgggctcgaaactcaagaaggcc
gccgaactcgggatcgaggtgaccgacgaggcaggctgggcggcgatcgtggctgaggcg
ctgggttag
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