Erysipelothrix rhusiopathiae SY1027: K210_08895
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Entry
K210_08895 CDS
T02688
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ers
Erysipelothrix rhusiopathiae SY1027
Pathway
ers03030
DNA replication
ers03410
Base excision repair
ers03420
Nucleotide excision repair
ers03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ers00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
K210_08895 (ligA)
03410 Base excision repair
K210_08895 (ligA)
03420 Nucleotide excision repair
K210_08895 (ligA)
03430 Mismatch repair
K210_08895 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ers03032
]
K210_08895 (ligA)
03400 DNA repair and recombination proteins [BR:
ers03400
]
K210_08895 (ligA)
Enzymes [BR:
ers01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
K210_08895 (ligA)
DNA replication proteins [BR:
ers03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
K210_08895 (ligA)
DNA repair and recombination proteins [BR:
ers03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
K210_08895 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
K210_08895 (ligA)
MMR (mismatch excision repair)
DNA ligase
K210_08895 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
K210_08895 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
BRCT_2
HHH
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AGN25340
LinkDB
All DBs
Position
1672290..1674269
Genome browser
AA seq
659 aa
AA seq
DB search
MSKERILALRKKLHQYNYEYHVMDQPTIADVEYDQLLRELNELEVKHPEFFDINSPTQKV
GGVVSERFSKVTHRFPMFSLGNAFSRSDLEVFDERLRAQFPNVSYVVELKIDGLAMSIDY
EDGLFIQAVTRGDGTVGEDVTQNIRVIDSIPLKLNIDEDVTVRGEVFMPVKSFTRVNESR
KENNEALFANCRNAAAGTIRQLDSKVVATRGLDGFWYTLVNAKELGITSQYDSLTYLKQI
GFKVNPEIKLCNTIDAVWQRIEEIEHMRASLPYDIDGVVIKVNDFAMQEELGFTVKTPRW
AIAYKFKAEEVKTRVEDIFVTVGRTGKITPNAKLTPVQISGSLVSYATLHNEDYITNKDI
RVGDEVVVRKAGEIIPEIVSVDVSNRTDVIKPYHFPKVCPVCMGHLVRFEGEADHYCVNV
DCSAKISEALVHFASRDAMNIDTLGERRVYQLHDAKLLNTITDIYTLQEHKDALEKLEKM
GPKSAEKLLDAIENSKNNSVEKLIFGLGIRHVGAKTSNVLAAYYKTIASLMDATYDELIE
IDEIGGVIAQSVVSFFEIDHNRELIEDLLERGVNGNYNHVVTSSKFEGMKFVLTGTLQTM
GRTDAKKLIESFGGSVSGSVSSKTDVVVYGESAGSKLTKAQSLGVKTWTEEEFLNEVNS
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaagaacgaattttagcgttgcgcaaaaaattacatcagtataattacgaatac
catgttatggatcaaccgacaattgcggatgttgaatacgatcaattattacgtgaattg
aatgagcttgaagtaaaacatcctgagttctttgacattaactcgccaacacaaaaagtg
ggtggtgtcgtatctgaacgattttcaaaagttacacaccgttttccaatgttttcgttg
gggaatgcattttctcgttcagatttagaagtgtttgatgagcgtttacgtgcacaattc
ccaaatgtttcttatgttgtggagttgaaaattgatggacttgcaatgtcgattgattat
gaagatggtttgtttatacaagctgtaacacgtggagatggtacggtgggtgaagatgta
acgcaaaatattcgtgttattgactccattcctcttaaattaaatattgatgaagatgtt
acggttcgtggtgaagtgtttatgccggttaaatcgtttactcgagtcaatgaatcacgt
aaggaaaataatgaagccttgtttgcgaattgtcgtaatgcggcagcgggaacaattcgt
caacttgattcaaaagttgttgcgactcgaggcttagatggtttttggtacacgttggtt
aacgctaaagaattagggattacaagtcaatatgattcccttacctatctaaaacaaatt
ggctttaaggtgaacccagaaataaagttatgcaatacaatcgatgcggtatggcaacgt
atagaagaaatcgagcacatgcgtgcgtccttaccttatgacatcgatggtgtagtaatt
aaagtaaacgattttgcgatgcaggaagaactcggatttaccgttaaaaccccgcgttgg
gccattgcttataaatttaaagcagaagaagtgaaaactcgtgttgaggatatctttgtg
accgtgggtcgtaccggaaagataacacccaatgcgaaactcactccggttcagatttca
ggttcactggtaagttatgcaacccttcataatgaggattacattactaacaaagatatt
cgagttggtgatgaggttgttgttcgtaaagccggtgagattattccggagattgtgtcc
gttgatgtcagcaatcgaacggatgtgattaagccatatcactttcctaaagtatgtcct
gtatgtatggggcatcttgttcgatttgaaggtgaggcggatcattattgtgtaaatgtt
gattgttctgcgaaaatatcggaggccttggttcatttcgcctcaagagatgccatgaac
atcgatacgttaggcgaacgtcgtgtttatcaattgcatgatgcgaaattgctcaacaca
attacggatatttatacattacaggaacataaagatgcacttgaaaaacttgagaaaatg
ggtcccaaaagtgcagaaaaattactagatgcaattgaaaacagcaaaaacaattcggta
gagaagttgattttcggactcggtatccgacatgtcggtgcgaaaacatctaatgttctt
gccgcttactacaaaacgattgcttcactgatggacgctacgtatgatgaactcattgaa
atcgatgagattggcggtgtcatcgctcaatctgttgtttcattcttcgaaattgatcat
aatcgcgaattaattgaagatttacttgaacgtggcgtgaatgggaactacaatcatgtt
gtgacttccagtaaatttgaagggatgaagtttgtgcttacgggaacattacaaacaatg
ggtcgaacggatgcaaagaaattgatcgaatcgtttggaggcagtgtatcaggtagtgtt
agcagtaagacagatgttgttgtgtatggtgagagtgctggatcaaaacttacaaaagct
caatcattgggtgttaaaacatggacagaagaagaattcttgaatgaggtgaactcatga
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