Agathobacter rectalis DSM 17629: EUR_17890
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Entry
EUR_17890 CDS
T02587
Name
(GenBank) NAD-dependent DNA ligase (contains BRCT domain type II)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ert
Agathobacter rectalis DSM 17629
Pathway
ert03030
DNA replication
ert03410
Base excision repair
ert03420
Nucleotide excision repair
ert03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ert00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EUR_17890
03410 Base excision repair
EUR_17890
03420 Nucleotide excision repair
EUR_17890
03430 Mismatch repair
EUR_17890
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ert03032
]
EUR_17890
03400 DNA repair and recombination proteins [BR:
ert03400
]
EUR_17890
Enzymes [BR:
ert01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EUR_17890
DNA replication proteins [BR:
ert03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EUR_17890
DNA repair and recombination proteins [BR:
ert03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EUR_17890
NER (nucleotide excision repair)
GGR (global genome repair) factors
EUR_17890
MMR (mismatch excision repair)
DNA ligase
EUR_17890
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EUR_17890
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
PTCB-BRCT
HHH_2
BRCT_2
RUBY_RBDX
Nlig-Ia
Lar_restr_allev
DNA_ligase_ZBD
Motif
Other DBs
NCBI-ProteinID:
CBK90836
LinkDB
All DBs
Position
complement(1804517..1806487)
Genome browser
AA seq
656 aa
AA seq
DB search
MENNKIKDKIDELVESLNRASKAYYNGADEIMPNYEWDAMFDELTQLEKETGYIRHDSPT
QNAGYEAEAGNREPHEYPALSLAKTKSIEELKKWAGDMPIWLSWKLDGLTLVLTYDGGRL
VKILTRGNGTVGSNITFLQDAISGFPKEIPYKGHMVVRGEATISYTDFKLLNDTIEDDDE
KYANPRNLASGTLNLDDVEEVKRRHVVFYAFTLVHIDDDIISWGDRMSYLSDMKFNVVKR
EATDAAGLDEAVKRWTRDVESGRMDVPVDGLVICYDDTAYAAGGSVTGHHATRAGFAFKW
QDEAVDTRLRYIEWSCAVSTISPVAVFEPVQIEGTTVSRASLCNLTEIERLGVGKECTLS
VIKANKIIPKCIAVKDAVGAVEIPKECPVCHHPTRIFVSKNSGVKTLHCTNPDCTAKNVK
KFSRFVSKSGMDIDGLSVQTMLKFINEGFIKQFPDIYHLPEHFDKISSMEGFGEKSCMNM
QTAIEKSRHVHPVNLIFALCIPLIGTDAGKKIVNAIGFDGFADRMRNATDFVDIDGIGQE
KSGSILEWYANPKNSAMFEALIKELDIEKVDIKDMSEGSLNGKTFVITGDVHDFANRSEF
KAYVESQGGKVTGSVSKKTDYLVNNDTESTSSKNKKAKELGIPIISEDTFIEMFGR
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atggagaataacaaaataaaagataagatagatgagcttgttgaaagtcttaaccgcgcg
tcaaaagcttactacaacggcgcagatgaaataatgccaaactacgagtgggatgcaatg
tttgatgagcttacacagcttgaaaaagagacaggatatatccgccatgacagtccgaca
cagaatgcaggctatgaggcagaggctggaaatcgtgagccgcatgagtatccggcactt
tcacttgccaagacaaagagcattgaggagcttaagaaatgggcaggtgatatgccaatc
tggctttcatggaagcttgacggactgacactcgtgctcacatatgacggtggcaggctt
gtgaaaatactgacgagaggaaatggaactgtaggaagtaacatcacctttttgcaggat
gccataagcggcttcccaaaggagataccatacaagggacatatggttgtaagaggggaa
gcgacaatttcctacacggattttaagctgttaaatgatacaatcgaggacgatgatgag
aaatatgccaatccaaggaaccttgcatccggtacattaaatctcgatgatgtggaagag
gtgaagcgcagacatgtagtgttttatgcgtttacactcgtgcatatagatgatgatatc
atatcatggggggatagaatgagctatcttagtgatatgaaattcaatgttgtcaaaagg
gaggcaacagatgcggcaggccttgatgaggctgtaaaacgctggacaagggatgtcgag
agtggcaggatggatgtgcctgtggacggacttgtcatatgctatgatgacactgcctac
gctgcaggcggaagcgtcacagggcatcatgctacgagagcaggttttgctttcaagtgg
caggatgaggctgtagatacgagacttcgttatattgaatggtcgtgtgcggtttcgaca
atatcgccggtggctgtttttgagccggtgcagatagagggtacgacggtttcgagagct
tcgctttgcaatctgactgagatagaaaggcttggagtgggaaaagagtgtacactttcc
gtgataaaagccaacaagattattccgaaatgcatagctgtaaaggatgcggtgggagca
gttgagataccgaaggaatgtccggtgtgtcatcatccgacacgcatatttgtaagtaaa
aacagcggtgtgaagacgctacattgcacaaaccctgactgtacagccaagaatgtcaaa
aagttttcaagatttgtcagcaaaagcggaatggatatagatggactttcggtacagaca
atgctaaaatttataaatgagggattcataaaacagttccctgacatataccatctgccc
gagcattttgataagataagcagcatggaaggatttggcgagaagtcgtgcatgaatatg
cagactgccatcgaaaaaagcagacatgtccatccggttaatctgatatttgcactctgt
atacctcttataggtaccgatgcaggcaagaagattgtcaacgcaataggttttgatggc
ttcgcggacaggatgagaaatgccactgactttgtggatatagacggcataggccaggaa
aagtcaggctccatacttgaatggtatgcaaatcccaaaaacagtgcgatgtttgaagca
ctgattaaggagcttgacatagaaaaggtcgatataaaggatatgtcggagggaagctta
aacggcaagacctttgttatcacaggcgatgtgcatgattttgccaacagaagcgagttt
aaggcctatgtggagtcacagggcggcaaggtgacaggaagcgtgtcaaaaaagacagac
tatctggtaaacaacgacactgaatctacttcatcaaaaaataaaaaagcaaaagaatta
ggaatacctatcatctcggaggatacatttatagagatgtttgggcgttag
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