Escherichia ruysiae: OSH18_19390
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Entry
OSH18_19390 CDS
T09019
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eruy
Escherichia ruysiae
Pathway
eruy03030
DNA replication
eruy03410
Base excision repair
eruy03420
Nucleotide excision repair
eruy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eruy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
OSH18_19390 (ligA)
03410 Base excision repair
OSH18_19390 (ligA)
03420 Nucleotide excision repair
OSH18_19390 (ligA)
03430 Mismatch repair
OSH18_19390 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eruy03032
]
OSH18_19390 (ligA)
03400 DNA repair and recombination proteins [BR:
eruy03400
]
OSH18_19390 (ligA)
Enzymes [BR:
eruy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
OSH18_19390 (ligA)
DNA replication proteins [BR:
eruy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
OSH18_19390 (ligA)
DNA repair and recombination proteins [BR:
eruy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
OSH18_19390 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
OSH18_19390 (ligA)
MMR (mismatch excision repair)
DNA ligase
OSH18_19390 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
OSH18_19390 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
HHH
PTCB-BRCT
Nlig-Ia
Prok-E2_C
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
WGM52333
LinkDB
All DBs
Position
4078595..4080610
Genome browser
AA seq
671 aa
AA seq
DB search
MESIERQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELITPDSPTQ
RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVLDRLKSNEKVTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGENIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLMQFKKWGLPVSDRVTLCESAEEVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQL
GFVSRAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLDALEA
ASIEELQKVPDVGIVVASHVHNFFAEDSNRNVISELLAEGVHWPAPVVINAEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMLRLLGN
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaaagacaactcacagaactgcgaacgacgcttcgccatcatgaatat
ctttatcatgtgatggatgcgccggaaattcccgacgctgaatacgacaggctgatgcgt
gagctgcgcgagctggaagcaaaacatccggaactcattaccccggattcaccaacccag
cgcgtaggtgcagcgccgctggcagccttcagccagatccgtcatgaagtaccgatgctg
tcgctggacaacgtttttgatgaagagagttttctcgctttcaacaaacgcgtactggat
cgtctgaaaagtaacgaaaaagtcacctggtgctgtgagctgaagcttgatggccttgcc
gtcagcattctgtatgagaatggcgttctggtcagtgcggcgacccgtggtgatggcacc
accggcgaagacatcacctctaacgtccgtactattcgcgcgattccgctgaaattgcat
ggtgagaatatcccggcgcgcctggaagtgcgtggtgaagtattcctgccacaagcaggg
ttcgaaaagatcaacgaagaggcgcgacgcacgggcgggaaagtatttgctaacccacgt
aatgctgcggcaggttcgctgcgtcagcttgatccgcgtatcacggcgaagcgaccgctc
acgttcttctgctacggcgttggtgtgctggaaggcggcgagctgccggacacccatctt
ggtcgtttaatgcaatttaaaaagtggggattaccggtcagcgatcgtgtcacgttatgt
gaatcggcagaagaggtgctggcgttttatcacaaagttgaagaagaccgcccgacgctg
ggctttgatatcgacggtgtggtgattaaagtcaactcactggcgcagcaggaacagctt
gggtttgtttcacgtgccccgcgctgggcagtggcatttaaattcccggcgcaggaacag
atgactttcgtgcgtgacgttgagtttcaggttgggcgtaccggcgctattacgcccgtt
gcgcgtctggaacctgtacatgttgcaggcgtgctggtgagcaatgctaccttacacaat
gccgatgaaatcgaacgtcttggtttacgtattggcgataaggtggtgatccgccgcgct
ggcgatgtgatcccgcaggtggttaacgtcgtgctttctgaacgccctgaagacacccgt
gaggttgtattcccgacgcattgcccggtatgtggttctgacgtcgagcgtgtggaaggt
gaagcagtcgcccgctgtacaggtggcctgatttgcggcgctcagcgtaaagagtcgctg
aaacattttgtttcccgtcgggcgatggacgttgacggtatgggtgacaaaatcatcgac
cagctggttgaaaaagagtacgtccacacacctgctgacctgtttaaactcaccgcaggc
aaactgaccggactggagagaatggggccgaaatcagcgcaaaacgtggttaacgcgctg
gaaaaagcgaaagaaaccacctttgctcgcttcctttatgcgcttggcattcgcgaagtc
ggcgaggccactgcagcaggtttggcagcatatttcggcacgctggacgcactggaagca
gcctcgattgaagagctgcaaaaagtgcccgatgtcggaattgtcgtcgcatcccatgtt
cacaacttctttgccgaagacagtaaccgcaatgtcatcagcgagctgttggcggaaggt
gttcactggcctgcgccggtggtgattaacgcggaagagatcgacagtccgtttgccggt
aaaaccgtggtgctcaccggtagcttaagtcagatgtcgcgtgatgatgctaaagctcgc
ctggtcgaactgggcgcgaaagtcgcgggcagcgtttcgaagaaaaccgatctggtgatc
gccggagaagccgcaggttctaaactggcgaaagcgcaggaattgggcattgaagtgatc
gacgaagcagagatgctacgtttgctgggtaactga
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integrated database retrieval system
