Erysipelothrix sp. Poltava: MX850_04430
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Entry
MX850_04430 CDS
T10367
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
erv Erysipelothrix sp. Poltava
Pathway
erv03030
DNA replication
erv03410
Base excision repair
erv03420
Nucleotide excision repair
erv03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
erv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
MX850_04430 (ligA)
03410 Base excision repair
MX850_04430 (ligA)
03420 Nucleotide excision repair
MX850_04430 (ligA)
03430 Mismatch repair
MX850_04430 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
erv03032
]
MX850_04430 (ligA)
03400 DNA repair and recombination proteins [BR:
erv03400
]
MX850_04430 (ligA)
Enzymes [BR:
erv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
MX850_04430 (ligA)
DNA replication proteins [BR:
erv03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
MX850_04430 (ligA)
DNA repair and recombination proteins [BR:
erv03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
MX850_04430 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
MX850_04430 (ligA)
MMR (mismatch excision repair)
DNA ligase
MX850_04430 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
MX850_04430 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
HHH
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
UPU39926
LinkDB
All DBs
Position
complement(615342..616988)
Genome browser
AA seq
548 aa
AA seq
DB search
MDLQCRLIMKMVCLYKSVTRGDGTVGEDVTQNIRVIDSIPLKLNIDEDVTVRGEVFMPVK
SFTRVNESRKENNEALFANCRNAAAGTIRQLDSKVVATRGLDGFWYTLVNAKELGITSQY
DSLTYLKQIGFKVNPEIKLCNTIDAVWQRIEEIEHMRASLPYDIDGVVIKVNDFAMQEEL
GFTVKTPRWAIAYKFKAEEVKTRVEDIFVTVGRTGKITPNAKLTPVQISGSLVSYATLHN
EDYITNKDIRVGDEVVVRKAGEIIPEIVSVDVSNRTDVIKPYHFPKVCPVCMGHLVRFEG
EADHYCVNVDCSAKISEALVHFASRDAMNIDTLGERRVYQLHDAKLLNTITDIYTLQEHK
DALEKLEKMGPKSAEKLLDAIENSKNNSVEKLIFGLGIRHVGAKTSNVLAAYYKTIASLM
DATYDELIEIDEIGGVIAQSVVSFFEIDHNRELIEDLLERGVNGNYNHVVTSSKFEGMKF
VLTGTLQTMGRTDAKKMIESFGGSVSGSVSSKTDVVVYGESAGSKLTKAQSLGVKTWTEE
EFLNEVNS
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atggacttgcaatgtcgattgattatgaagatggtttgtttatacaagtctgtaacacgt
ggagatggtacggtgggtgaagatgtaacgcaaaatattcgtgttattgactccattcct
cttaaattaaatattgatgaagatgttacggttcgtggtgaagtgtttatgccggttaaa
tcgtttactcgagtcaatgaatcacgtaaggaaaataatgaagccttgtttgcgaattgt
cgtaatgcggcagcgggaacaattcgtcaacttgattcaaaagttgttgcgactcgaggc
ttagatggtttttggtacacgttggttaacgctaaagaattagggattacaagtcaatat
gattcccttacctatctaaaacaaattggctttaaggtgaacccagaaataaagttatgc
aatacaatcgatgcggtatggcaacgtatagaagaaatcgagcacatgcgtgcgtcctta
ccttatgacatcgatggtgtagtaattaaagtaaacgattttgcgatgcaggaagaactc
ggatttaccgttaaaaccccgcgttgggccattgcttataaatttaaagcagaagaagtg
aaaactcgtgttgaggatatctttgtgaccgtgggtcgtaccggaaagataacacccaat
gcgaaactcactccggttcagatttcaggttcactggtaagttatgcaacccttcataat
gaggattacattactaacaaagatattcgagttggtgatgaggttgttgttcgtaaagcc
ggtgagattattccggagattgtgtcagttgatgtaagtaatcgaacggatgttattaag
ccatatcactttcctaaagtatgtcctgtatgtatggggcatcttgttcgatttgaaggt
gaggcggatcattattgtgtaaatgttgattgttctgcgaaaatatcggaggccttggtt
catttcgcctcaagagatgccatgaacatcgatacgttaggcgaacgtcgtgtttatcaa
ttgcatgatgcgaaattgctcaacacaattacggatatttatacattacaggaacataaa
gatgcacttgaaaaacttgagaaaatgggtcccaaaagtgcagaaaaattactggatgca
attgaaaacagcaaaaacaattcggtagagaagttgattttcggactcggtatccgacat
gtcggtgcgaaaacatctaatgttcttgccgcttactacaaaacgattgcttcactgatg
gacgctacgtatgatgaactcattgaaatcgatgagattggcggtgtcatcgctcaatct
gttgtttcattcttcgaaattgatcataatcgcgaattaattgaagatttacttgaacgt
ggcgtgaatgggaactacaatcatgttgtgacttccagtaaatttgaagggatgaagttt
gtgcttacgggaacattacaaacaatgggtcgaacggatgcaaagaaaatgatcgaatcg
tttggcggcagtgtatcaggtagtgttagcagtaagacagatgttgttgtgtatggtgag
agtgctggatcaaaacttacaaaagctcaatcattgggcgttaaaacatggacagaagaa
gaattcttgaatgaggtgaactcatga
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