Erwinia sp. E602: GKQ23_07550
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Entry
GKQ23_07550 CDS
T10706
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
erwe Erwinia sp. E602
Pathway
erwe03030
DNA replication
erwe03410
Base excision repair
erwe03420
Nucleotide excision repair
erwe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
erwe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GKQ23_07550 (ligA)
03410 Base excision repair
GKQ23_07550 (ligA)
03420 Nucleotide excision repair
GKQ23_07550 (ligA)
03430 Mismatch repair
GKQ23_07550 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
erwe03032
]
GKQ23_07550 (ligA)
03400 DNA repair and recombination proteins [BR:
erwe03400
]
GKQ23_07550 (ligA)
Enzymes [BR:
erwe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GKQ23_07550 (ligA)
DNA replication proteins [BR:
erwe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GKQ23_07550 (ligA)
DNA repair and recombination proteins [BR:
erwe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GKQ23_07550 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GKQ23_07550 (ligA)
MMR (mismatch excision repair)
DNA ligase
GKQ23_07550 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GKQ23_07550 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
Zn_ribbon_NUD
DZR_2
Prok-E2_C
Motif
Other DBs
NCBI-ProteinID:
QUG74858
LinkDB
All DBs
Position
1359271..1361280
Genome browser
AA seq
669 aa
AA seq
DB search
MQSVHDQLTHLRTLLRHHEYQYHVLDAPEVPDAEYDRLLGELRALEAEHPELITPDSPTQ
RVGAAPLAAFGQVRHEVPMLSLDNAFDEESYLAFNKRVQDRLKSSDEVTFCCELKLDGLA
VSLLYENGLLVRAATRGDGTTGEDITSNVRTIRAIPLVLRGEQIPARLEVRGEVFMPQDG
FEKMNDEARRTGSKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGIGVVDGGEMPRSHL
ARLEQLQAWGLPVSDRVRLCHTAQEVLAFYQQVEADRPTLGFDIDGVVIKVDSQDLQEQL
GFVARAPRWAVAFKFPAQEQLTTVRDVEFQVGRTGAITPVARLEPVLVAGVMVSNATLHN
ADEIERLGLKIGDRVMIRRAGDVIPKVVSVVESATDAREVVFPRHCPVCGSDVERVEGEV
IARCTGGLICGAQRKGALKHFVSRRAMDIDGMGEKIIDQLVDKEYVKNPADLFDLTAGKL
TGLDRMGPKSAQNVVDALQKAKQTTLARFLYALGISEVGEATAANLAAHFGTLDALMAAD
LEALIAVPDVGSVVASHVRNFFDEESNREVIRLLIEKGVVWPDVVVVRPEEIDSPFAGKT
VVLTGSLSILSRDEAKDRLVALGAKVSGSVSKKTDLLIAGEAAGSKLAKAQELGIAVIDE
AEMVRLLGE
NT seq
2010 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccgtacacgaccaactaacccatttacgcaccctgctgcgccaccacgagtac
cagtatcacgtgcttgacgcaccggaggtgccggacgccgagtatgaccggctgctcggt
gaactgcgcgcgctggaagccgagcaccctgagctgatcacgccggactcccccacccag
cgcgtgggcgccgccccgctggcggcgtttggccaggtgcggcatgaggtgccgatgctg
tcgctggacaacgccttcgatgaagagagctatctcgcctttaacaagcgcgtacaggac
cggctgaaaagcagtgatgaggtcaccttctgctgcgagctgaagctggatggcctggcg
gtcagcctgctgtatgaaaacggcctgctggtgcgtgcggccacgcgcggcgacggcacg
accggtgaagatatcaccagtaacgtgcgcaccatccgcgccatccccctggtgctgcgc
ggggagcagatcccggcgcggctggaggtgcgcggcgaagtgtttatgccgcaggacggc
tttgagaaaatgaacgacgaggcgcggcgcaccggcagtaaggtgtttgccaacccgcgc
aacgcggcggccggctcgctgcgccagctggacccgcgcatcaccgccaaacgtccgctg
accttcttctgctacggcattggcgtggtggacggtggcgagatgccgcgtagccatctg
gcgcgtctggagcagctgcaggcctggggcctgccggtcagtgaccgggtgcgcctgtgc
catacggcgcaggaggtgctggcgttctatcagcaggtggaagccgaccggccgacgctg
ggctttgatattgacggcgtggtgatcaaggtggattcgcaggatctgcaggagcagctg
ggctttgttgcccgcgcaccgcgctgggcggtagcctttaagttcccggcgcaggagcag
ctgaccaccgtgcgtgacgtagagttccaggtcgggcgcaccggagcgatcacaccggtt
gcccggctggagccggtgctggtggcgggagtgatggtcagcaacgccacgcttcacaat
gccgatgaaattgagcggctggggctgaagatcggcgatcgggtgatgatccgccgcgcc
ggcgacgtgatcccaaaagtggtcagcgtggtggaatcggccactgatgcgcgtgaggtc
gtttttcctcgccactgcccggtatgcggctcggacgttgagcgcgtcgaaggtgaagtg
atcgcccgctgcaccggcggcctgatctgcggcgcacagcgtaaaggcgccttaaaacac
ttcgtttcgcgtcgcgcgatggatatcgacggcatgggcgagaagatcatcgatcagctg
gtggataaagagtacgtcaaaaatccggccgatctgttcgacctgacggcggggaaactg
accgggctggatcgtatggggccaaagtcggcgcaaaacgtggttgatgccttgcagaag
gcgaagcagactacgctggcgcggttcctctacgcgctgggcatcagcgaagtcggtgaa
gcgaccgccgccaacctcgccgcgcattttggcacgctggacgcgctgatggcggccgat
ctggaagcgctgatcgcggtgccggacgtcggcagcgtggtcgccagccacgtgcgtaac
ttcttcgatgaggagagcaaccgtgaggtgatccgcctgctgattgagaagggcgtcgtc
tggccggacgtggtggtggtgaggccggaggagatcgacagcccgttcgccggtaaaacc
gtggtgctgaccggttcactgagcatcctgtcccgtgatgaagccaaagaccggctggtg
gcgctgggcgctaaggtcagcggcagcgtctcgaaaaagaccgatctgctgatcgccggt
gaagccgccggctccaagctggcgaaagcgcaggagctgggcattgcggtgattgacgaa
gcggagatggtccgcctgctgggagagtaa
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