Erythrobacter sp. SDW2: LY632_07615
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Entry
LY632_07615 CDS
T10668
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
erys Erythrobacter sp. SDW2
Pathway
erys03030
DNA replication
erys03410
Base excision repair
erys03420
Nucleotide excision repair
erys03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
erys00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LY632_07615 (ligA)
03410 Base excision repair
LY632_07615 (ligA)
03420 Nucleotide excision repair
LY632_07615 (ligA)
03430 Mismatch repair
LY632_07615 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
erys03032
]
LY632_07615 (ligA)
03400 DNA repair and recombination proteins [BR:
erys03400
]
LY632_07615 (ligA)
Enzymes [BR:
erys01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LY632_07615 (ligA)
DNA replication proteins [BR:
erys03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LY632_07615 (ligA)
DNA repair and recombination proteins [BR:
erys03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LY632_07615 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LY632_07615 (ligA)
MMR (mismatch excision repair)
DNA ligase
LY632_07615 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LY632_07615 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
PTCB-BRCT
HHH_5
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
UIP05586
LinkDB
All DBs
Position
1555918..1558071
Genome browser
AA seq
717 aa
AA seq
DB search
MNDLSILTEAEAANELMRLAKQIAHHNRRYHAEDDPEITDQEFDALVRRNEALEAAFPHL
VREDSPSKGVGHAVASSPLGKVTHEVRMMSLDNAFSDEEVAEFIARVRRYLNLGEDEPLA
FTAEDKIDGLSCSLRYENGVLDRAATRGDGQVGEDVTANVAHIADIPQKLTPLPLAGGAG
GGPVGGGGSAPTPDPSRKREGEVPEVFEVRGEVYMAKQDFAALNAAQHEAGGKLFANPRN
AAAGSLRQKDASVTAKRPLRFWAHGWGAASEVPGTTQSDVVRQLAAWGFPVSPHFRRCDT
LEEMLAAYAAIGASRPDLPYEIDGVVYKVDRLDYQQRLGFVAKAPRWAIARKFPAEQAET
TLESIDIQVGRTGKLTPVGRLAPVLVGGVTVTNVTLHNRDEIARLRVRPGDRVLVQRAGD
VIPQVVKNLTPEVERAPFVFPDHCPECGSEAVNEEGEVDVRCTGGLICPAQRTERLKHFV
SRAALDIEGLGEKTIDQFFALGWLESPADIFRLRKRRDQILALEGWKDKSVDNLLASVEN
KRQPDAARLLFGLGIRHVGAVTARDLMKNFHELPALRNAAEKAHAGDQDALAALTGIDGI
GGAVVEALGDFFHEEHNRAVWDDILSEVSPPPYIVETLDSPVAGKTVVFTGKLETMSRDE
AKAQAERLGAKAAGSVSAKTDLLVAGPGAGSKLKKAAELGIEVIDEAGWAAIVAAAG
NT seq
2154 nt
NT seq
+upstream
nt +downstream
nt
atgaacgacctctcgatcctcaccgaagccgaagcggccaacgaactgatgcggttggcg
aagcagatcgcccatcacaaccggcgctatcatgccgaggacgatccggagatcaccgat
caggaattcgacgcactggtgcggcgcaatgaggcgctggaagcggcattcccgcatctg
gtgcgcgaggattcgccgtccaagggtgtgggccatgcggtggcctcctcgccgcttggc
aaggtgacgcacgaggttcgcatgatgagcctcgacaatgctttctcggacgaggaagtg
gccgagttcatcgcccgcgtgcggcgctacctcaacctgggcgaggatgaaccgctggcc
ttcacggccgaggacaagatcgacggtctgtcctgctcgctgcgctatgaaaacggcgtg
ctggaccgcgccgcgacgcggggtgacgggcaggtgggcgaggatgtgacggcgaatgtc
gcgcatatcgccgacatcccgcagaagcttactccgctcccgcttgcgggaggggccggg
ggtgggccagtcggcggtggtggctccgcgcccacccctgacccctcccgcaagcgggag
ggcgaggtccccgaagtgttcgaagtgcgcggcgaagtttatatggcaaaacaggacttt
gccgcactcaatgcggcgcagcatgaagccggcggaaagctgttcgccaacccccgcaat
gccgccgccggatcgctgcggcagaaggatgcgagcgtcacggcgaaacgcccgttacgg
ttctgggcgcatggctggggcgcggcgagcgaggtgcctggcacgacccagtccgacgtg
gtgcggcaactggcggcgtggggcttcccggtctcgccgcatttccgccgctgcgacacg
ctggaggaaatgctcgccgcctatgccgccatcggcgcgtcacggcccgatctgccctat
gaaatcgacggcgtggtctacaaggtcgaccggctggattaccagcagcggctcggcttc
gtcgccaaggcgccgcgctgggccatcgcgcgcaagttcccggccgagcaggcagagacc
acgttggaaagcatcgacatccaggtcggccggaccggcaagctgacgcctgtgggtcgg
ctcgccccggtgctggtcggcggggtgacggtgaccaatgtcacgctccacaaccgcgac
gagatcgcccggctgagggttcgcccgggcgaccgcgtactggtccagcgcgccggggac
gtgatcccgcaggtggtgaagaatctgactccggaagttgaacgcgcgccgttcgtcttc
cccgaccattgccccgaatgcggcagcgaggcggtcaatgaagagggcgaagtcgatgtc
cgctgcaccggcgggctgatctgcccggcccagcggaccgaacggctcaagcatttcgtc
agccgcgccgcgctcgatatcgaggggctgggcgagaagaccatcgaccagttcttcgcg
ctcggctggctggaaagcccggccgatatcttccgcctgcgtaagcgacgcgatcagatc
cttgcgctcgaagggtggaaggacaagtctgtcgataacctgttggcttctgtggaaaac
aagcgccagcccgacgctgcgcggctgctgttcgggctcggcatccgccacgtcggcgcg
gtcacagcgcgcgacctgatgaagaatttccacgaacttccggcgctgcgtaacgctgca
gagaaggcccatgcgggtgaccaagacgcgctggccgcgctcaccggcatcgatggcatc
ggcggcgcggtggtcgaggcgctgggtgatttcttccacgaggaacacaaccgcgcggtg
tgggacgatatcctctccgaagtcagcccgccgccctacatcgtcgaaacgctcgacagc
cccgtcgcgggcaagacggtggtcttcacaggcaagctcgaaaccatgagccgcgacgaa
gccaaggcacaggccgaacggctgggggccaaggccgccggctcggtcagcgccaagacc
gacctgctggtcgcggggccgggggcgggtagcaagctcaagaaggccgccgaactcggc
atagaagtgatagacgaggcgggctgggctgccatcgttgccgctgcgggctag
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