Erythrobacter sp. JK5: KDC96_03830
Help
Entry
KDC96_03830 CDS
T10266
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eryt Erythrobacter sp. JK5
Pathway
eryt03030
DNA replication
eryt03410
Base excision repair
eryt03420
Nucleotide excision repair
eryt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eryt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
KDC96_03830 (ligA)
03410 Base excision repair
KDC96_03830 (ligA)
03420 Nucleotide excision repair
KDC96_03830 (ligA)
03430 Mismatch repair
KDC96_03830 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eryt03032
]
KDC96_03830 (ligA)
03400 DNA repair and recombination proteins [BR:
eryt03400
]
KDC96_03830 (ligA)
Enzymes [BR:
eryt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
KDC96_03830 (ligA)
DNA replication proteins [BR:
eryt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
KDC96_03830 (ligA)
DNA repair and recombination proteins [BR:
eryt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
KDC96_03830 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
KDC96_03830 (ligA)
MMR (mismatch excision repair)
DNA ligase
KDC96_03830 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
KDC96_03830 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QUL39333
LinkDB
All DBs
Position
790523..792586
Genome browser
AA seq
687 aa
AA seq
DB search
MTDTMSEAEAANELMRLAREIARHDRLYHAEDSPEISDPEYDALVRRNAELEARFPHLVR
EDSPSRKVGHAIAASPLSKVTHEVRMMSLDNAFNREEVEDWVARVRRYLNLAGDEPVAIT
AEDKIDGLSCSLRYEQGKLVRAATRGDGQVGEDVTANVAHIADIPQQIAASDMPDVFEVR
GEIYMSKQDFTALNAAQHEAGGKLFANPRNAAAGSLRQKDASVTATRPLRFWAYGWGAAS
EVPAETQHEVMRRIEAWGFPVSPFLTVTDSVDAMIAHYDEIGRQRPDLGYEIDGVVYKVD
RLDWQQRLGSVGKAPRWALAHKFPAERAETTLEAIDIQVGRTGKLTPVGRLAPVLVGGVT
VTNVTLHNRDEIERLGVRPGDRIVIQRAGDVIPQVVENLTRDADRAPFVFPDNCPECESE
AVAEEGEVDVRCTGGLICPAQRTQRLEHFVSRKALDIEGLGSKTIAQFFALGWLESPADI
FRLHQRREEILALEGWQDKSVDNLLAAVEEKRAPDAARLLFGLGIRHVGETTSRDLMKNF
HELPVLRDLADRARAGEDEAVQELTSIDGIGETVVSALGDFFHEPHNVSVWEDLLGEVSP
PRYEVETLDSPVAGKTVVFTGKLETMSRDEAKAQAERLGAKAAGTVSAKTDLLVAGPGAG
SKLKKAQELGIAVIDEAGWAEIVAQAG
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacacgatgagcgaagccgaagcggccaacgaattgatgcgtctggcgcgggag
atcgcgcggcacgatcggctgtatcacgccgaagattcgcccgagatcagcgatccggaa
tacgatgcgctggtgcgccgcaatgcggagctcgaggcacgtttcccgcacctggtccgc
gaggattctccgtcgcgcaaggtcggccacgccatcgcggcgtcgccgctgtcgaaggtg
acgcacgaagtccggatgatgagcctcgacaacgccttcaaccgcgaggaggtcgaggac
tgggtcgcgcgggtgcgacggtatctcaatctcgccggggacgaaccggtagcgattacc
gccgaggacaagatcgacgggctgtcgtgctcgctgcgatacgagcagggaaagctggtg
cgcgccgcgacgcggggcgacgggcaggtgggcgaggacgtgaccgccaacgtggcgcac
atcgccgatattccgcagcaaatcgcagcctctgacatgcccgacgtgttcgaggtgcgc
ggcgagatttatatgtctaaacaggactttaccgcactcaatgctgcgcagcatgaagcg
ggtggaaagctgttcgccaacccccgcaatgccgctgcgggatcgctgcggcaaaaggac
gccagcgtcaccgcgacgcgaccgttgcggttctgggcctatggctggggcgcggcgagc
gaggttcccgccgagacccagcacgaggtgatgcgccggatcgaggcttggggctttccc
gtctcgccgttcctgaccgtcaccgacagcgtcgatgcgatgatcgcacattatgacgag
atcggccgccagcggcccgacctcggctacgagatcgacggcgtggtctacaaggtcgac
cggctcgactggcagcagcggctcggctcggtcggcaaggcaccgcgctgggcgctggcg
cacaagttcccggcggaacgcgccgaaacgacgctcgaggcgatcgacatccaggtcggg
cgcaccggcaagctgaccccggtcggacggctcgcgccggttctggtcggcggtgtgacg
gtcaccaacgtgacgctgcacaatcgcgacgagatcgagcggctcggcgtgcggccgggc
gaccggatcgtgatccagcgcgccggcgacgtgatcccgcaggtggtcgagaacctgacc
cgcgacgccgatcgcgcacccttcgtgtttccggacaattgccccgaatgcgaaagcgag
gccgtggccgaagaaggcgaagtcgatgtccgctgcaccggtgggctgatctgcccggcg
cagcgcactcagcggctcgagcatttcgtcagccgcaaggcgctcgatatcgagggattg
ggcagcaagacgatcgcgcagttcttcgcgctgggatggctcgaaagtcctgccgatatc
ttccgcctgcaccagcgccgcgaggagatcctcgcgctcgaagggtggcaggacaagtct
gtggacaacctgttggcagctgtggaggaaaagcgcgcgcccgacgcggcgcggctgctg
ttcggcctcggcattcgccatgtcggcgagacgacatcgcgcgacctgatgaagaacttt
cacgaactgccggtgctgcgcgacctcgccgatcgcgcgcgggcaggggaagacgaagcg
gtgcaggagctgacctcgatcgatggcataggtgagaccgtggtgtccgcgctcggggat
ttcttccacgagccgcacaatgtctcggtgtgggaggacctgctgggcgaggtcagcccg
cctcgctacgaggtcgaaacgctcgactcgccggtcgcgggcaagaccgtggtattcacc
ggcaagctcgaaaccatgagccgcgacgaagccaaggcgcaggccgagcggctcggcgcc
aaggcggcaggtacggtcagcgcgaagacggacctgctggtcgccggtccgggcgcggga
tcgaagctcaagaaggcgcaggaactggggatcgcagtgatcgacgaagcgggctgggcc
gagatcgtcgcgcaggcgggttag
DBGET
integrated database retrieval system
