Egibacter rhizosphaerae: ER308_05470
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Entry
ER308_05470 CDS
T05860
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
erz
Egibacter rhizosphaerae
Pathway
erz03030
DNA replication
erz03410
Base excision repair
erz03420
Nucleotide excision repair
erz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
erz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ER308_05470 (ligA)
03410 Base excision repair
ER308_05470 (ligA)
03420 Nucleotide excision repair
ER308_05470 (ligA)
03430 Mismatch repair
ER308_05470 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
erz03032
]
ER308_05470 (ligA)
03400 DNA repair and recombination proteins [BR:
erz03400
]
ER308_05470 (ligA)
Enzymes [BR:
erz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ER308_05470 (ligA)
DNA replication proteins [BR:
erz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ER308_05470 (ligA)
DNA repair and recombination proteins [BR:
erz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ER308_05470 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ER308_05470 (ligA)
MMR (mismatch excision repair)
DNA ligase
ER308_05470 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ER308_05470 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
Nlig-Ia
HHH_5
BRCT
DNA_ligase_ZBD
HHH
PTCB-BRCT
BRCT_2
DUF7501
Motif
Other DBs
NCBI-ProteinID:
QBI19046
UniProt:
A0A411YCY0
LinkDB
All DBs
Position
complement(1164958..1166988)
Genome browser
AA seq
676 aa
AA seq
DB search
MADEETRRRATDLRVRIEYHRYRYYILSDPEVSDDEFDALVRELTELERAHPELDDPNSP
TKQVGAPPDPAFQPVTHRVPMLSLDNAFEAHELDAWFERVEKGLDGRRPTYVCELKIDGV
GCSLVYLDGHLAQAVTRGDGRVGEDITANVRTVEAVPDWLDLDRPPPRLEVRGEVYYPVD
AFETMNADREARGEPRFANPRNAASGALRQKDPRITATRPLSMVCHGMGALEGVNVRRHT
QFLELLRDAGLPTTAETRTFDSPEGVNEFIAYWGEHRHDPEYEIDGVVIKVDDHGQQRQL
GSTSAAPRWAIAWKYPPEEQETRLRDIEVNVGRTGKVTPFAQLEPVTVAGSTIGTATLHN
EDQAAAKDVRPGDTVRVRKAGDVIPEVLGYVASKRPREVEEAGPWRMPSVCPFCGSDLVR
LEGEAATYCTNVDCPNRQLESLAHFASRGALDIEGLGYETAKLLLDTGLVKDLADTFHLD
RDALLDLEGFGEKKADNLLAGIEAAKQQPLERLLVGLNIPHVGGTVARLLARAFGSLETL
READEEAIASVDGVGPIIAQAVRRWFENPRNAELADKLIAAGVRTDAEAGERSDLLDGVS
VVITGSLEGFTRDEAKEAVTDRGGKVTSSVSKRTSAVVVGAEPGSKADKAAELGVPTLDE
AGFRRLLETGEVASGG
NT seq
2031 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgaggagacacgacgccgggcgaccgacctgcgggtgcgcatcgagtaccac
cggtaccggtactacatcctcagcgaccccgaggtctccgacgacgagttcgacgcgctc
gtccgggagctcaccgagctcgagcgcgcccaccccgagctcgatgaccccaacagcccg
acgaagcaggtgggggcaccgccggacccggcgttccagccggtcacccatcgggtgccg
atgctgtcgctcgacaacgcgttcgaagcgcacgagctcgacgcgtggttcgagcgggtc
gagaagggcctcgacgggcgtcgccccacctacgtctgcgaactcaagatcgacggggtc
ggctgcagcctcgtctacctggacggccacctcgcccaggccgtgacccgcggcgacggc
cgggtcggcgaggacatcaccgcgaacgtacgcacggtcgaggcggtgcccgactggctg
gacctcgaccggccgcccccacggctcgaggtgcgcggcgaggtctactacccggtcgac
gcgttcgagacgatgaacgccgatcgcgaggcccggggggagccgcgcttcgcgaacccc
cgcaacgccgcgagcggggcgttgcggcagaaggatccccggatcacggcgacgcggccg
ttgtcgatggtctgtcacgggatgggcgccctggagggcgtgaacgtgcggcgccacacg
cagttcctggagctgttgcgcgacgcggggctgccgacgacggccgagacccggacgttc
gactcccccgagggcgtgaacgagttcatcgcctactggggcgagcaccgtcacgatccc
gagtacgagatcgacggggtcgtgatcaaggtcgacgaccacggccagcagcgtcagctc
gggtccacgagcgccgctccgcggtgggcgatcgcgtggaagtacccgcccgaggagcag
gagacgcggctgcgcgacatcgaggtcaatgtcgggcggaccgggaaggtgacccccttc
gcgcagctcgagccggtgaccgtggccggctccaccatcgggacggccacactgcacaac
gaggaccaggccgccgccaaggacgtgcgtcccggcgacacggtgcgggtccgcaaggcc
ggcgacgtgattcccgaggtgctcgggtacgtcgcgtcgaagcgacctcgcgaggtcgag
gaggcgggtccgtggcggatgccctcggtgtgcccgttctgcggctccgacctcgtgcgg
ctcgagggcgaggcggcgacctactgcaccaacgtcgactgccccaaccgccaactcgag
tcgctcgcccacttcgcgtcccgcggggcgctcgacatcgagggtctgggctacgagacc
gcgaagctcctgctcgacacgggcctggtgaaggacctggccgacacgttccacctcgac
cgcgatgcgctcctcgacctcgagggcttcggcgagaagaaggccgacaacctgctcgcg
ggcatcgaggccgcgaagcagcagcccctcgagcggctgctcgtcggcctcaacatcccg
cacgtcggcggcaccgttgcccggctgctggcccgcgccttcggcagcctcgagaccctg
cgcgaggccgacgaggaggcgatcgcctcggtcgacggggtcgggccgatcatcgcgcag
gcggtgcggcggtggttcgagaacccccgcaacgccgagctcgccgacaagctgatcgcc
gcaggggtgcgcaccgacgcggaggcgggcgagcgcagtgacctgctcgacggggtgagt
gtcgtcatcaccggctcgctcgagggtttcacgcgggacgaggcgaaggaagccgtcacc
gaccgtggcggcaaggtcacctcgagcgtgtcgaaacggacctccgcggtcgtggtcggg
gccgagcccggcagcaaggccgacaaggccgccgagctcggggtaccgaccctcgacgag
gcagggttccgtcgcctgctggagaccggtgaggtcgcatcgggcggttga
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