Etheostoma spectabile (orangethroat darter): 116670144
Help
Entry
116670144 CDS
T08457
Symbol
thbs1
Name
(RefSeq) thrombospondin-1
KO
K16857
thrombospondin 1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04115
p53 signaling pathway
esp04145
Phagosome
esp04148
Efferocytosis
esp04350
TGF-beta signaling pathway
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
116670144 (thbs1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116670144 (thbs1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
116670144 (thbs1)
04148 Efferocytosis
116670144 (thbs1)
09143 Cell growth and death
04115 p53 signaling pathway
116670144 (thbs1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
116670144 (thbs1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
116670144 (thbs1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
esp04131
]
116670144 (thbs1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116670144 (thbs1)
Membrane trafficking [BR:
esp04131
]
Endocytosis
Phagocytosis
Opsonins
116670144 (thbs1)
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116670144 (thbs1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
EGF_3
TSP1_CFP_C
TSP1_ADAMTS
EGF_CA
EGF
cEGF
Laminin_G_3
TSP1_CCN
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
116670144
NCBI-ProteinID:
XP_032356413
LinkDB
All DBs
Position
20:complement(11576111..11585110)
Genome browser
AA seq
1171 aa
AA seq
DB search
MLCGILLLLMLWSCEGARLAENRDDNSVYDLFDLARVNKRGNGVSLVKGEDPYSPAYKLL
NADLIPPVPDSSFRDLLDSIQAERGFLLLVNLKQLKKSRGSLLTIEKNDGSGPVFEIISN
GKANTLDVVHSFMNQQQVVSIDDADLATGHWKNITLFVQDDQVQLYVGCEKIDVSEMDVP
IYKVLSQQVADIAKLRIGKGAVRDKFKGVLQNVHFVFGTTLDAILRNKGCQSGAVLTDVM
TLDNPVNGSSPAIRTDYTGHKAKDLQSVCGYSCEDITGMFKELKGLGVVVKQLSNELRKV
YEEISLPEIQMHIHGGICIHNGIVYKDKDEWTVDGCTECTCQKSATVCRKISCPLIPCAN
ATVPDGECCPRCGTPSDYAEDGWSPWSDWTHCSVTCGRGIQQRGRSCDRINSNCEGTSVQ
TRDCYPKECDKRFKQDGGWSHWSPWSSCSVTCGEGVITRIRLCNSPTPQMGGSDCQGEGR
QTEICQKSPCPINGGWGPWSPWDTCTVTCGGGVQIRKRLCSDPIPKYGGKDCVGDATVTQ
VCNKQDCPIDGCLSSPCFPGAKCTSFPDGSFRCGKCPLGYDGNGITCKDIDECEEVPDAC
HTHNGVHRCENTEPGYNCLPCPTRFSGPQPFGKGVEQATAKKQVCKPRNPCQDGSHDCHK
NANCIYLGVFSESMFRCECKPGYAGNGRICGEDSDLDGWPNTDLHCVENATYHCMKDNCP
NLPNSGQEDHDKDGLGDECDHDDDNDGIPDDRDNCPKEYNPSQYDADRDDIGDRCDNCVY
EANTDQTDTDNNGEGDACAVDIDGDGILNEIDNCPYVYNVDQRDTDRDRVGDHCDNCPLE
HNPDQIDSDSDRVGDKCDNNQDIDEDGHQNNLDNCPYISNANQADHDKDGKGDACDHDDD
NDGIPDDKDNCRLAFNPDQLDSDGDGRGDVCKDDFDQDSVLDIHDVCPENFAISETDFRR
FQMVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGFDEFSAVDFSGTFFINTDRD
DDYAGFVFGYQSSSRFYTVMWKQITQTYWSHTPTRAQGYSGLSIKVVNSTTGPGEHLRNA
LWHTGDTPGQVRTLWHDPKNIGWKDFTAYRWHLTHRPKTGLIRVVMYEGKRIMADSGNLY
DKTYAGGRLGLYVFSQEMVYFSDLKYECRDT
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atgctgtgtggcatccttttgctgttgatgctttggagctgtgaaggcgcaagattggca
gagaatcgggatgataacagtgtgtatgacttatttgatctggcccgggtaaacaagaga
ggcaatggagtgagtctggtcaaaggtgaagatccctacagccccgcatacaagctcctc
aatgcagacctgatccccccagtccccgacagctccttcagggacctcctcgactccatc
caggctgagaggggcttcctcctcctggtcaacctgaagcagttaaaaaaatccaggggc
agccttttgaccatcgagaagaacgacggatccggacccgttttcgaaatcatctccaac
ggaaaggctaacactctggatgtggtccactcctttatgaaccagcagcaggtcgtgtcc
atcgatgatgctgatttggccactggacactggaagaacataacgctgtttgttcaggat
gaccaggtgcagctttatgttggctgtgagaagatcgatgtatcagagatggatgtgcca
atctacaaagttctgtcccaacaagtggcagacattgccaagctaagaattggaaaggga
gctgtcagggacaaattcaagggagtgctccaaaatgtgcactttgtatttgggactact
cttgatgccatactgagaaataagggatgccagagtggagctgttttaaccgatgtcatg
accctggacaacccagtcaatggctccagccccgccattaggactgattataccggccac
aaagccaaagatctgcagtctgtttgcggctactcttgtgaggacatcactggcatgttt
aaggagctcaagggactcggtgtggttgttaaacagctgtcgaatgagctccgcaaagtg
tatgaggagatttcactgccggaaattcaaatgcacatccacggtggaatttgcatccac
aacggcattgtttacaaggacaaagatgaatggactgtggatggctgcacagagtgtacc
tgccagaaatctgctactgtgtgtcgcaaaatctcttgccctctgatcccatgtgctaat
gccactgtgcccgacggagagtgctgccctcgctgtggaacacctagtgactatgcagag
gatggttggtccccctggtctgactggacccattgttcggtgacttgtggtaggggcatc
cagcagcgtggacgctcctgcgaccgcatcaacagcaactgtgagggcacctctgtccag
acccgtgactgctaccccaaggaatgtgacaaacgcttcaaacaggatggtggttggagc
cactggtctccctggtcttcatgctctgtgacctgtggtgagggggtcatcacccggata
cgcctctgcaactcccccacaccccagatgggtggcagtgactgccagggagaaggacgt
caaacagaaatctgccaaaagtcaccctgtcctatcaatggaggttggggaccttggtca
ccatgggacacctgcactgttacctgtggtggaggagtccagatccgcaaacgtctctgc
tctgaccccatccccaaatatggaggaaaggattgtgttggagatgctactgtaactcaa
gtgtgcaacaaacaggactgtcctattgatggttgtctctccagcccatgcttccctggc
gcaaaatgcaccagcttccccgatggctctttccgatgcggcaagtgtccacttggctat
gatgggaacggcatcacttgcaaagacattgacgagtgtgaagaggtccctgatgcttgc
cacacgcataatggagtccaccgctgtgagaacactgaacccggctacaactgtctgccc
tgccccacacgtttctcaggtcctcagccctttggaaaaggagtggaacaggcaactgct
aaaaaacaggtttgcaaaccccgtaacccttgccaagatggtagccacgactgccataaa
aatgctaactgcatctacttgggcgtcttctctgaatccatgttccgctgcgagtgcaag
ccaggatatgccggaaatggccgtatttgcggagaagatagtgacctggacggatggccc
aacactgacctgcattgtgtggagaacgccacttaccactgcatgaaggataactgcccc
aaccttcccaactctggccaggaagatcacgacaaagatggcttgggtgatgaatgtgac
catgatgatgacaatgatgggatccccgatgatagggacaactgtccaaaagaatacaac
ccttcccagtatgacgcagacagagatgacattggcgaccgctgtgacaactgtgtgtac
gaggctaacactgaccaaaccgacaccgacaacaacggagagggtgacgcctgtgctgtt
gacattgatggtgacggcattctgaatgagattgacaactgcccatatgtttacaacgtg
gaccagagagataccgacagggacagggttggagaccattgtgacaactgccctctagag
cacaaccctgatcagatcgactctgactcagatcgcgtaggagacaagtgcgacaacaac
caggacattgacgaggatggtcaccagaacaatttggacaattgcccctacatatccaat
gccaaccaggcagaccacgacaaggatggcaagggtgacgcctgtgaccatgatgatgac
aacgacggcattcctgatgacaaagacaactgtaggctggcatttaaccctgatcagctg
gattctgatggtgatggccgtggtgacgtgtgcaaagacgattttgaccaagacagtgtt
ttggacatccatgacgtgtgcccggagaactttgccatcagtgaaacagacttccgcaga
ttccaaatggttcctttggaccccaagggcacctcccagattgaccccaactgggtggtc
cggcatcagggcaaggagctggtgcagactgtcaactgcgatcctggcattgctgttggc
tttgatgagttcagcgcggtggatttcagtggaacgttcttcatcaacacggacagagat
gacgactacgctgggttcgtgtttggctaccagtccagctcacgcttctacactgtgatg
tggaaacagatcacacagacctactggtcccacacacccacaagagctcaaggctactct
ggcctgtcaatcaaagtggtcaactccaccaccgggcctggtgagcatctgaggaacgcc
ctgtggcacactggagacacccccggacaggtgcgtactctgtggcacgaccccaagaac
attggctggaaggacttcactgcctacagatggcatctgacccacagacccaagactggt
cttattagagtggtcatgtatgaaggcaagagaatcatggccgattctggaaacctttac
gacaagacctatgctggtgggcgactaggcttgtatgtcttctctcaggagatggtttac
ttctcagacctcaaatacgaatgcagagatacataa
DBGET
integrated database retrieval system
