Etheostoma spectabile (orangethroat darter): 116670727
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Entry
116670727 CDS
T08457
Symbol
brca1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
KO
K10605
breast cancer type 1 susceptibility protein [EC:
2.3.2.27
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03440
Homologous recombination
esp03460
Fanconi anemia pathway
esp04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
116670727 (brca1)
09124 Replication and repair
03440 Homologous recombination
116670727 (brca1)
03460 Fanconi anemia pathway
116670727 (brca1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
esp01009
]
116670727 (brca1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
esp04121
]
116670727 (brca1)
03036 Chromosome and associated proteins [BR:
esp03036
]
116670727 (brca1)
03400 DNA repair and recombination proteins [BR:
esp03400
]
116670727 (brca1)
Enzymes [BR:
esp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
116670727 (brca1)
Protein phosphatases and associated proteins [BR:
esp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
116670727 (brca1)
Ubiquitin system [BR:
esp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
116670727 (brca1)
Multi subunit type E3
BRCC complex
116670727 (brca1)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
116670727 (brca1)
DNA repair and recombination proteins [BR:
esp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
116670727 (brca1)
BRCA1-A complex
116670727 (brca1)
BRCA1-B complex
116670727 (brca1)
BRCA1-C complex
116670727 (brca1)
BRCA complex
116670727 (brca1)
FA (Fanconi anemia) pathway
Downstream FA components
116670727 (brca1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-C3HC4_3
RING_XB3-XBAT31
RTT107_BRCT_5
zf-RING_UBOX
zf-RING_2
zf-Nse
zf-RING_5
TRAF3_RING
YicC-like_C
zf-MIZ
zf-ANAPC11
zf-RING_4
PTCB-BRCT
Sina_RING
Baculo_IE-1
Prok-RING_4
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
116670727
NCBI-ProteinID:
XP_032357233
LinkDB
All DBs
Position
21:complement(18079827..18102098)
Genome browser
AA seq
1448 aa
AA seq
DB search
MTMKTPVAIDVKKGISVLWETLQCPICLDIMTAPVSTNCDHQFCKFCMLKLLDNTKQNRA
ACPVCKTKITKRSLQESPGFQRLVAGLQDMIQAYERDTGTNYLTGMSKQKDQSGVTDAEA
AEHSHDMSFGITPGNGEIVDNDDLSRSHSSTIAAQNGFARLMELEDTSPLTTENEGLDSG
LGEAPPMSKKEMRSPTDNLEPVATSVHKTRGNKQFHKLEKTSLCASLIPDETEHQPLRKS
SRKKQKTDLESDKILKEKQKKSLEKVAEWLMNVPTEGSLELEKLNKDTDDSDSCSSSSTI
DVKQHNSDVNPGKVDRAKALEEQVFGAVYKRERRGTRVVSPPANVFVKPSTTKETQTVSK
RRKSVLTPADFFKKTGSEGKSASDMEEEQQRLEEVNDNSSDIFKEAVHIKAMMKNDIDKY
KEESNSFPESDKNNGKDEVSSPVFDIGQQLPDRKSKKSTRSSLQQVDSDLQEQAQANLES
TEQKKTDKRKGKNMRLEKAKPARVPKPLVLVRVKNGETSCKTRPRSGEVQVHIENYPSSE
DQETPVARSTRRSRRLQLFTEEIQECHKKADLKTNKDGKNCNVGKQSEDAKDGTWDNTAS
PSTNENMTKVAERNGCIYDQDIEEIENMESDERTSSMRPTEDVKKSLAEVPEAETLSEAS
AACYVTVVPSFTSPTEAAVVNPTLESDNPTNHLPNNVQLETYPSQRKCADIENAEDNNDS
ELDTEQLLRSFKAIKRKSFHLGGSNLKRCRGLDQENFQGAEAQENQRLCSGVESAKYPIY
TKASEITNQEALGDNKNSSCSDLISPSFSPAPTRYPVVEKPDQMVVEASIPGSSQDSAGG
NCVSNSVSSALTPNKVSKREIESPHLSDMSEVVDSGLCFTGAEREEPNEPSNYSQITEKQ
QGAGRGREIRDSMSVCQQAANGIHSVNTAEHFSNAECSLTPDGLGIPVVQIVHEAQSDSH
GSASSSINGMPRRRTRAQRLTSSLESDCSEEELPTLTEIFGTSALPPAVTKELAGFSEAN
RCEDATVCGAKQLDRPPACPSPDCVNSSQGSVDLFGTPDESDVPVNNVGVSSQIESSQFS
NEVLVTQQKIEMQKELVRLEKLMALVTEVLQEKEGSPAKEVSSKTIPSSKTTDPHAHILL
PCDQGRGQGSDWKAVSEVEREPSTRPSDGKEVIQPSGSKHGTTADMAVQRSTDTGPSVKG
TAVSKTPGSTSAAKTLKSNGSPSDGHEDKENNTPPRDRTKAKMVLVSSGLGSNEQIMVKR
FAKRVGARVVSQVTPEVTHIIMHTDEQLVCERTLKYFLGIAGRKWVVSFQWISECFKLKK
LLDESVFEVRGDVVNGPSHHGPMRARTTEDNNLLLKGYTICLQGPFTDMTTDEMEWMVEL
CGAAVVKDPLLLDSKQKSHQLVIVQPGSESSSSSTYSSLSKQATVVTRGWLLDTVATYTL
QTYDKYTT
NT seq
4347 nt
NT seq
+upstream
nt +downstream
nt
atgaccatgaaaaccccagtggccattgatgtcaaaaaggggatttcagtcctttgggag
actctgcagtgtcccatatgcttggatataatgactgcacctgtatctactaactgtgac
catcagttttgcaaattttgtatgttgaagcttttggacaacaccaaacaaaacagggct
gcatgtccagtgtgtaaaaccaagataaccaaaaggagcttgcaggagagccctgggttt
cagagacttgtagcaggacttcaggacatgatacaggcatatgaacgtgacactggcaca
aactacttaactggaatgtccaagcaaaaagatcagtcgggagtcacagatgctgaagct
gctgaacattctcatgatatgtcatttggaattacacctggcaatggggaaattgtcgac
aacgatgatctttcaaggtctcactcctcgactatagcagcccagaatggatttgcaaga
ctgatggaacttgaagacacaagtcctttgacaacagaaaatgaaggcctggacagtggc
cttggggaggccccaccaatgtctaaaaaggaaatgcgcagccctacagataatttggaa
cctgtagcaacatcagtacacaaaactagaggcaataagcaattccacaaactggagaaa
acttccctttgtgcatcattaattccagacgagaccgaacaccaacctttaagaaaatca
tcaagaaagaagcagaaaacggatttggagtctgacaagattcttaaagagaaacagaag
aaaagtctagagaaagttgcagagtggctcatgaacgttccaactgaaggaagtcttgag
ttagagaaactcaacaaagacaccgatgactcggacagctgttcttcctcttcaacaata
gatgtcaagcaacacaacagtgatgtgaatcctggaaaagtggatcgtgctaaagccctt
gaggagcaggtgtttggggctgtctacaaacgagagcgaagggggaccagagttgtctca
cctccagctaatgtttttgtcaagccatcaacaactaaagaaacacagactgtgtccaaa
agaagaaagagtgttctcactcctgctgattttttcaagaaaacaggctctgaagggaaa
agtgcaagtgacatggaggaagagcaacaaaggttagaagaagtaaacgacaacagcagt
gacatttttaaagaagctgtacacatcaaggccatgatgaaaaatgatatagacaaatat
aaggaagagtcaaacagctttccagaaagtgacaaaaataatggcaaagatgaggtttcc
tctcccgtgtttgatattggacaacagctaccagacagaaagtcaaagaaaagtacgcgc
agcagtctgcagcaggtcgacagtgatttgcaagagcaagctcaggcaaatttagaaagt
actgagcaaaagaaaactgacaagaggaaaggtaaaaacatgaggttggaaaaagccaag
cctgctagagttccgaaacctcttgttctggttagagttaaaaatggagaaaccagttgt
aagactagaccaaggtcaggagaagttcaagttcatattgagaattaccctagcagcgaa
gaccaagaaacccccgtcgcaaggagcacgaggagaagtagaagacttcaactcttcact
gaagaaatccaagagtgtcacaagaaagcagacttgaaaaccaataaagacggaaaaaac
tgcaatgttggaaagcaatctgaggatgctaaagatggaacatgggataatacggcatca
ccatccacgaatgaaaacatgacaaaggtggctgaaagaaatggatgtatttatgatcaa
gatatagaagaaatagaaaacatggagtctgatgagagaacatcttctatgagaccaact
gaagatgttaaaaagtcccttgctgaagtgccagaggctgaaaccttgtctgaagctagt
gctgcatgttatgtcactgttgtcccaagctttacaagtccaactgaagcagctgtggtc
aatccaacacttgaaagtgacaatccaacaaatcatctcccaaacaatgttcagttggaa
acctaccctagccagagaaaatgtgctgatatagaaaatgcggaggataacaatgacagt
gaactggacacagagcaacttctcaggagcttcaaagccattaaaaggaaatcttttcat
cttggcggttcaaatttgaaaaggtgccgtggtttagaccaagaaaacttccagggtgcc
gaagcacaggaaaaccaacggctttgttctggtgttgaatctgcaaaatatccgatatac
acaaaggcatctgaaatcaccaaccaagaggcattaggagacaataaaaactcatcttgc
agtgatttgatatccccttccttttcacccgccccaacaagatatccagttgttgagaaa
ccagatcaaatggtggttgaagcctcgatccctggtagcagtcaggacagcgccggtggt
aactgtgtctccaatagtgtcagcagcgccctcactccaaataaagtttccaaacgtgaa
atagaaagccctcatctttctgatatgtctgaagtagtcgattctgggctctgcttcaca
ggcgctgaacgcgaggagccaaatgaaccctccaattattctcaaatcacagagaaacag
cagggtgccggcagaggaagggagataagagacagcatgtctgtgtgccagcaagctgct
aatggaatacattcagtcaacactgctgaacatttttcaaacgcagagtgctctttaact
cctgacggccttggaatacctgttgtacaaattgtccacgaagcacagtcggacagccat
ggtagtgccagttcctccatcaatggcatgcccaggaggaggacaagggcccagaggctc
acctcttcattggaatcagactgcagtgaagaggaattaccaactttgacagaaatcttt
ggaacatctgctcttccccctgcggtgacaaaggagctggcaggcttcagtgaagctaat
agatgtgaggatgctacagtttgtggagcaaaacagttggaccgtccacctgcatgcccc
agccccgactgtgtcaattccagccaaggttctgtggacttatttggaacgccagatgaa
agtgatgtcccagtaaacaacgtcggcgtttcctcacaaatcgaatcatcacaattttca
aacgaagtgcttgttacacagcaaaaaatagaaatgcagaaggagctggtgagattggag
aagttaatggctctggtgacggaggtgcttcaggaaaaagaaggcagtcctgcaaaagaa
gtgtcctcaaaaactattccgagcagcaaaaccacagacccacacgctcacatactcctc
ccttgtgaccagggtagaggccaaggttcagactggaaagctgtttcagaagtagagcga
gagcccagcacaagaccatctgatggcaaagaggtcatccagcccagtgggtcaaagcat
ggcaccactgcagacatggcagtgcagcgctccacagacacagggccgagtgttaaaggc
accgcagtctccaaaactcctggctcaacatccgcagcaaaaacattaaagagcaatggt
tcaccatcggatgggcatgaagacaaagaaaacaacactccaccgagagacagaactaaa
gctaagatggtgctagtgtcatctggattaggctccaatgaacagataatggtcaaaagg
tttgccaagcgagttggtgcccgtgtggtttcccaggtaacgccggaggtgacccatatc
ataatgcacacagatgaacaactggtatgtgagcgcacactgaagtacttccttggcatt
gcaggcaggaagtgggtggtgagcttccagtggatttcagagtgcttcaaactaaagaaa
ctcttagatgagagtgtctttgaagtgagaggtgacgtggtgaatgggcccagccaccac
ggccccatgagagctcgtaccactgaagataataacttactcctaaagggctacacgatc
tgtttgcaagggccttttacagacatgactacagatgaaatggagtggatggtggagctc
tgtggagcagctgtagtcaaagatcctcttctcctcgacagtaaacagaagtcccatcag
ttggtgattgtacagcctggatcagagtcttcatcgtcgtccacatacagcagtctttct
aaacaagctacagtcgtgacacgtggttggctgttggataccgtggcaacctacaccctc
caaacctacgacaagtacacaacgtag
DBGET
integrated database retrieval system
