Etheostoma spectabile (orangethroat darter): 116688246
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Entry
116688246 CDS
T08457
Symbol
lsm3
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm3
KO
K12622
U6 snRNA-associated Sm-like protein LSm3
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03018
RNA degradation
esp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
116688246 (lsm3)
09123 Folding, sorting and degradation
03018 RNA degradation
116688246 (lsm3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
esp03019
]
116688246 (lsm3)
03041 Spliceosome [BR:
esp03041
]
116688246 (lsm3)
Messenger RNA biogenesis [BR:
esp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
116688246 (lsm3)
mRNA degradation factors
5'-3' decay
Lsm complex
116688246 (lsm3)
Spliceosome [BR:
esp03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
116688246 (lsm3)
Complex C
U2 snRNP components
116688246 (lsm3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
TIG_SUH
Glutaredoxin
Motif
Other DBs
NCBI-GeneID:
116688246
NCBI-ProteinID:
XP_032370018
LinkDB
All DBs
Position
4:31397753..31401760
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AA seq
126 aa
AA seq
DB search
MKSRVFTDLATPVSVKPHDADSKPMADEVEQQPSTNTVEEPLDLIRLSLDERIYVKMRND
RELRGRLHAYDQHLNMILGDVEETVTTVEIDEETYEELYKSTKRNIPMLFVRGDGVVLVA
PPLRVG
NT seq
381 nt
NT seq
+upstream
nt +downstream
nt
atgaaatcgcgtgtttttacggacctggcaacccccgtatcagtcaagccacacgacgca
gactcaaaaccaatggcggacgaagttgagcagcaaccgagtaccaacacggttgaggag
ccactcgatttgatcagactcagtctagatgagaggatctacgtcaagatgaggaatgac
cgggagctccgtggccgactgcatgcctacgatcagcacctgaacatgatcctgggtgac
gtggaggagacggtgacgacggtggagatcgatgaggagacttatgaggaactatacaag
tcaaccaagaggaacatccccatgctgtttgtcagaggagatggcgtggtcctcgtagct
ccgcccctccgggtgggctaa
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integrated database retrieval system
