Etheostoma spectabile (orangethroat darter): 116694965
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Entry
116694965 CDS
T08457
Name
(RefSeq) low-density lipoprotein receptor-like isoform X1
KO
K12473
low-density lipoprotein receptor
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03272
Virion - Hepatitis viruses
esp04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03272 Virion - Hepatitis viruses
116694965
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
116694965
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
esp04131
]
116694965
Membrane trafficking [BR:
esp04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
116694965
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
FXa_inhibition
cEGF
EGF_CA
SGL
Vgb_lyase
DUF5050
EGF
EGF_3
TMEM154
Motif
Other DBs
NCBI-GeneID:
116694965
NCBI-ProteinID:
XP_032380838
LinkDB
All DBs
Position
2:16501964..16516060
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AA seq
872 aa
AA seq
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MFGMWKGLTGLSTCCCLLMLIHFSPQADAAVTCSSTQFKCGNGRCITRRWICDGTDDCGD
GTDELPATCTTKTCLQSEFNCGAPTNQCIPGAWHCDGKAECDNGADEKNCTAKQCRAGEF
RCANGQCLSPTFVCDGDNDCSDGSDEASCPKRTCSSHSFQCNNSVCVPALWSCDGDKDCA
DGSDEWPQNCVGRQPQITAVHCGVHDFQCENGECIHSSWRCDGGIDCQDRSDEVNCSRPT
CLPDEFQCNDGACIHGSHQCDKEPNCRDLSDEIGCHIVNVCEGPTKFKCRSGECISMEKV
CDKQRDCRDWSDEPVKECNNNECLTGHGGCSHYCNDLKVGYNCSCPPGYSLQIDKKTCED
IDECAEPDTCSQICINLPGSYKCDCEKGYEINPVSKTCKAESGTVPTLYFTNRHEVRTIT
VDRKEYVRLIPQLKNVVALDIDMPNKMIFWSDLSLKKIYSSKIDVAGNSSYHSVVIGSGI
EAPEGIAVDWIHGNIYWTDSVLKTISVATTDGSKRKALITNNLEKPRAITVDPVNNFMYW
TDWGDEAKIEKSGLNGAGRLALVTDNIVWPNGITLDMVNQRLYWVDSKMHTLSSIDVNGG
TRHSLIFSEEKLSHPLSLTVFEEKVFWTDMTNSAVFSANRLTGKDITQLATNLVQPEDIV
VYHNLKQPIVTNWCRESNSMNGGCEFLCLPAPLVNQHSPKYTCACPDHMAMGADMRKCVT
AVSVAPPAENKTGAPLAPKAPTKHAPTRLPVPTTTTTTTTRANKKLTTTSSSTEEPAATA
QGKRLAAFPKEAPSSHPIALYVVLPILVMSLLIFGAVLLWRNWRLKNTNTIHFDNPVYQK
TTEDELHICRNSCEGYVYPQRQMLSMEDVDVA
NT seq
2619 nt
NT seq
+upstream
nt +downstream
nt
atgtttgggatgtggaagggactcaccgggctgtccacatgttgctgtctgttgatgctg
attcatttttcgccccaagcagatgcagccgtcacatgcagctccactcagttcaagtgt
ggaaatgggaggtgcattaccaggaggtggatttgtgatggcaccgacgactgtggtgat
ggaactgatgaacttcctgcaacatgcacaaccaaaacatgtctgcagtcggagttcaat
tgcggcgcacccaccaaccagtgtataccaggagcctggcactgtgacggcaaagctgaa
tgtgacaacggcgctgacgagaaaaactgcaccgccaaacaatgcagagctggcgagttt
cgctgcgccaatggccagtgtttatcccccaccttcgtttgcgacggcgacaacgactgt
tcagacggctcagatgaggcttcctgccccaaacgcacatgcagctctcattcctttcag
tgtaacaactcagtgtgtgtgccggccctgtggagctgcgatggagacaaggactgtgct
gatgggtcggatgagtggccacagaactgtgtgggacggcagccgcagattacagctgtg
cactgcggcgtccacgacttccagtgtgaaaatggggagtgtatccacagcagctggagg
tgtgacggaggcattgactgccaggatcgatcagacgaggtcaactgcagtcgtcctaca
tgtcttccagatgagttccagtgtaatgacggtgcctgtatccatggcagccaccaatgt
gacaaagagcccaactgcagggacctcagtgatgagattggctgccacatagtaaatgtg
tgtgaaggccccaccaagttcaagtgtcgcagtggggagtgtatcagcatggagaaagtg
tgtgacaaacagagagactgcagggactggtctgatgaacctgtcaaagagtgcaacaac
aacgagtgtttgactggacatggtggatgctcccattactgcaacgacctgaaagttggc
tacaactgctcctgccctcctggatacagcctgcagattgacaagaaaacctgtgaagac
attgatgaatgcgctgagccggacacttgcagtcagatctgcatcaacctgcccggcagc
tacaagtgtgattgtgagaagggttacgaaatcaaccctgtgagcaagacctgcaaggct
gaatcaggcactgtacctaccctctacttcaccaatagacacgaggtgaggacaataacg
gtggaccgcaaggaatacgttcgtctgatcccccagctgaagaatgtggtggctttggac
attgacatgcctaacaagatgatcttctggtctgacctatctctaaagaaaatttacagc
tccaagatagacgtggccggtaactcctcttaccattctgtagtaattggcagtgggatt
gaggccccagagggcattgcggtggattggatccatggcaacatctactggactgacagc
gttttgaagactatctctgtggcaacgacagatggcagtaagcggaaagccctgatcaca
aataacctggagaagccaagagccatcacagtcgaccctgtaaataactttatgtactgg
acagattggggtgacgaggctaagatagagaagagtgggttgaatggagcgggtcgcctt
gccttggtaacagataacattgtgtggcccaatggcatcaccctggacatggtcaaccag
cgtctctactgggtggactccaagatgcacactctgtccagcattgatgtgaatgggggg
acacgacacagcctcatttttagcgaggaaaagctctctcatcccctctctctgactgtc
tttgaggagaaagtgttttggacagacatgaccaacagtgctgtatttagtgccaaccgc
ctgacggggaaggacatcactcagctggcgacaaacctggtccagccagaggacatcgta
gtgtaccacaacctcaagcagccaattgttacaaactggtgcagagagagtaacagtatg
aatggaggatgtgagtttctgtgccttcctgctcctcttgtcaaccagcactctcctaaa
tacacctgtgcctgtcctgaccacatggccatgggagctgacatgaggaaatgtgtgaca
gcagtctcagttgcccctcctgctgaaaacaaaaccggtgcaccgctcgcgcccaaagct
cccaccaagcatgctccaaccaggctgccggtccccaccactactacaactacaaccacc
agagctaacaaaaaactcacaactacctcatcgagcacagaagagcctgctgccactgct
caaggtaaaagattggcagcttttcccaaagaagccccttcatcccaccctattgctctc
tacgttgtgttgccgatactggtcatgtccctgctgatctttggagcagtgttgctttgg
agaaactggcgtttgaagaacaccaacaccatccactttgacaatccagtgtaccagaaa
accacagaggatgagctacacatctgcaggaacagctgtgagggctacgtttaccctcag
aggcaaatgctaagcatggaggatgtggatgttgcgtga
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