Etheostoma spectabile (orangethroat darter): 116696316
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Entry
116696316 CDS
T08457
Symbol
kdm2a
Name
(RefSeq) lysine-specific demethylase 2A
KO
K10276
F-box and leucine-rich repeat protein 10/11 [EC:
1.14.11.27
]
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09120 Genetic Information Processing
09126 Chromosome
03083 Polycomb repressive complex
116696316 (kdm2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
esp03000
]
116696316 (kdm2a)
04121 Ubiquitin system [BR:
esp04121
]
116696316 (kdm2a)
03036 Chromosome and associated proteins [BR:
esp03036
]
116696316 (kdm2a)
Enzymes [BR:
esp01000
]
1. Oxidoreductases
1.14 Acting on paired donors, with incorporation or reduction of molecular oxygen
1.14.11 With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
1.14.11.27 [histone H3]-dimethyl-L-lysine36 demethylase
116696316 (kdm2a)
Transcription factors [BR:
esp03000
]
Eukaryotic type
Zinc finger
CXXC CpG-binding proteins
116696316 (kdm2a)
Ubiquitin system [BR:
esp04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
116696316 (kdm2a)
Chromosome and associated proteins [BR:
esp03036
]
Eukaryotic type
Histone modification proteins
Histone demethylases
116696316 (kdm2a)
Polycomb repressive complex (PRC) and associated proteins
Noncanonical PRC1 (PRC1.1)
116696316 (kdm2a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PHD_4
zf-CXXC
F-box-like
JHD
JmjC
F-box
LRR_6
Cupin_8
C1_1
LRR_8
Cupin_1
LRR_4
Motif
Other DBs
NCBI-GeneID:
116696316
NCBI-ProteinID:
XP_032383060
LinkDB
All DBs
Position
10:complement(16044754..16062399)
Genome browser
AA seq
1310 aa
AA seq
DB search
MEDPHTRYSKRLRTGTRRRYQDDGISDDEIEGKRMFDLDMKLQCVRFNSDLIKHMEGKDF
TFEYIQREGLRDPIVFDTADGLGIQMPDSDFSVSDVKFFVGSRRIVDVMDVNTQKGIEMS
MAQWRRYYETPPSEREKLYNVISLEFSHTRLENLVKRPASVDLIDWVDNMWPRHLKERQR
DSTNAIIDMHYPKVQKYCLMSVQGCFTDFHIDFGGTSVWYHILRGGKVFWLIPPSPQNLE
MYENWVLSGKQGDIFLGDKCHDCQRIELKQGNTFIIPSGWIHAVYTPEDTLVFGGNFLHS
FNIPMQLNIYSIEDRTRVPAKFRYPFYYEMCWYVLERYLYCQTNISHLTPEFQKYSLGIG
LTQADLEASDHTKNGTSNGVNSDTEIKEVIVKEEEEIKEEEAAQVSTPQHMLTPFELEGL
WNLLGKLEELPEQKKCVPTGIMNPTALLEDMRTLLKQHANDNPKLSYTGEPIVKWPKRPS
WYQPPTPLPLAVFTRPRLGPTLHKPLGQRSTKRSSISALRRRRVRCKRCAGCCRKECGTC
QYCHDMRKFGGPGRMKKGCIMRQCLTPALPNTARCAICGEGESDESNPSTHSLMECSVCS
QIVHRQCIKESGEGKVNKDLPSCWECPKCYRGKDSASESSSDEESEESEGSTSLPPSKLA
YREGIGVGDGMRQGRRSRSSVRPSAPPPSQKLLLQHQQNRKRANALELKLKKRIKLERSK
ILTKQSVERSPRLLGSRVMSRLRSATSRQSQGRGRGSTWTSGSSYHISSGGTGSFQQQQS
SVGLVLEPKGESRRGRGRGVRLRGGGAGRGIRGGRSHEDLEGESEYSSSTNSSSSSSSSS
SSSDDDDQEEEMGQNSGRGLDKENQPQSRRGGRAAKEREEKVCEVANQNGAEEEVEEEEI
EQDSETGGKDGSHLKVTLQRPTRAKRDPSAIVPKLEAITPQTATSTIHNQTRALVRPPIR
NRSPPDQHFNRHTLPHTRSGHTHTSHPEKLEDSKKTRFSRPAKLSNGASSSSSTSELPHL
RIPLSALQEGGSEADRENSGSGPGCEREVWVSVFCYLSRADLCVCMAVCKNWYKWCLDKR
LWSRIDLSVKRTVTPQALTGIIKRQPVTLDLSWTNISKKQLNWLVGRLPGLKDLMVAGCS
WSSISALCSSGCPLLRSLDLRYADGVKDSQIRDLVTPPGCDNRSQLRTMQCLRLAGLDIS
DSTLRLVIRHMPHLTKLDLSHCNSLTDHSVNLLTAVGSSTRNTLTELNLGGCSKLTDLCL
KYLRRLSCISLLDLRGSKGVSRKACEAFISELSVNTLYCLSDEKLIQRIS
NT seq
3933 nt
NT seq
+upstream
nt +downstream
nt
atggaggaccctcatacacgatacagcaaacgcctgcgtacagggacgcggcgccgctac
caggatgatggaatttcagatgatgaaatcgaagggaaacggatgttcgacctggacatg
aagttgcagtgcgtcaggtttaactccgacttgatcaaacacatggagggtaaagatttc
acatttgagtacatccagagggaagggctcagggaccccattgtatttgatacagctgat
ggccttggaatacaaatgccagactcagatttcagtgtgagtgatgtcaagttttttgtt
ggtagtcgacgcattgtagacgtgatggatgtcaacacccagaagggtattgagatgtca
atggctcagtggcgacgctactatgagacgccgccgtctgaaagagaaaaactttacaac
gtcatcagcttggagttcagccacaccaggctagaaaatctggtgaaacgaccggcttcg
gtggacctcattgactgggtggacaacatgtggccccgccatctcaaggagagacagaga
gactctaccaatgctattatagacatgcattatcccaaagtacagaagtactgtctcatg
agtgtgcagggctgcttcacagatttccacattgactttggaggcacttccgtctggtac
cacatcctgcgaggaggaaaggtgttctggctaattccaccctcaccacagaacctggag
atgtatgagaactgggttttatcaggaaaacagggtgacatcttcttaggggataagtgt
cacgactgtcagaggatagagctcaaacaaggcaacaccttcataatcccatcagggtgg
atccatgctgtgtacaccccagaagacacgttggtgtttggggggaatttcctccacagc
tttaacatccctatgcagctcaacatctacagcattgaggatcgcacacgggtgccagca
aagttccgctatccgttctactatgagatgtgctggtatgtcctggagcgatacctctac
tgtcagaccaacatctcccacctcactccagagttccagaaatactccctaggcatagga
ctgacccaggctgaccttgaagccagtgaccacaccaagaatggcacctccaatggagtt
aacagtgacacagaaatcaaggaggtcattgtcaaggaagaagaagaaatcaaagaagaa
gaggcagctcaagttagcacacctcagcacatgctgactccctttgagctggaaggactg
tggaacctgttagggaagctcgaggagctgccggagcagaagaagtgtgtccctacaggc
atcatgaaccctacagccctgctcgaagacatgaggactcttctgaaacagcatgccaat
gataaccctaagctgtcctacactggagagcccattgtcaagtggcctaaaagaccgtca
tggtaccagccccccactccccttcctctagccgtctttacccgtccccgcttgggccct
accctacacaagcctctgggtcagaggtccaccaaacggtcctccatctctgctctgagg
cgcagacgggtgaggtgcaagcgttgtgctggctgctgcaggaaggagtgcggcacctgc
cagtactgccacgacatgaggaagtttggtgggcctggacgcatgaaaaagggctgtatc
atgagacagtgtctaacgcctgccctgccgaacacagcgcgatgtgctatatgtggagaa
ggggaatcggatgaatcaaatccgagcactcactcactcatggagtgctctgtgtgctca
cagattgtccatcgtcaatgcattaaggaatctggtgaggggaaggtcaataaagatttg
cctagctgctgggaatgtcccaaatgttacagaggcaaagactcagcatcagagtcttcc
agcgatgaggaaagtgaagagtcggagggctcaacctccttgccaccgtccaaacttgcc
taccgggaaggcattggtgtgggtgacgggatgagacaagggagacgtagcagatcctca
gtacgaccctcggcaccaccaccttctcagaaactgctactgcagcatcaacaaaaccgc
aaaagagcaaatgcactggagctcaaacttaagaagaggataaaactagagcgcagcaaa
atcttaacgaaacagtctgtagagcgttctcccaggctgttgggctccagggtgatgtcc
cgcctgcgctctgctaccagcagacaatctcagggcagaggtcggggctccacctggacg
agtggctcctcttaccacatttcttcaggagggactgggtctttccagcaacagcagtct
tccgtcggtctggtacttgagcccaagggagagtcccgcagagggagggggagaggggtg
aggctgcggggaggaggagcaggaagaggaatccgaggtggtagaagccatgaagatttg
gagggggagagtgagtatagtagcagcactaacagcagcagcagcagcagcagcagcagc
agcagcagcgacgacgatgaccaggaagaggagatggggcagaacagtgggagaggattg
gataaagaaaaccagccacagtcaaggcgaggaggacgggcagccaaagagagagaagag
aaagtgtgcgaggtggccaaccaaaatggtgcggaggaggaggttgaggaggaggagatt
gagcaggacagtgaaacggggggcaaagatggctcacatcttaaagtgacactccaaagg
ccaaccagagccaagcgggacccatcagccattgttcccaaattagaagcaatcacccct
caaactgccacttccacaatacacaaccagaccagagccctcgtcagaccccccattaga
aatcgcagcccccctgatcagcacttcaatagacacactcttccacacactcgtagtgga
cacactcacacctcccacccagagaagctggaggactctaaaaaaacaaggtttagcagg
ccagctaaactgagcaatggcgcctcttcttcttcttcaacctcagagcttccccatctt
cgcatccctctgtctgccctgcaggaaggaggaagcgaggcagacagggagaatagtggg
agcgggccaggctgtgagagggaggtgtgggtatccgtcttctgttacttaagtcgagca
gatctctgcgtctgcatggccgtctgcaagaactggtacaaatggtgtttagacaagcgg
ctttggtcccggattgacctgagcgtcaaacgcaccgttactcctcaggccctaacaggc
atcataaagagacagccggtcacgctcgatctctcttggaccaacatctctaaaaaacag
ctcaactggcttgttggccgcctgcctggactgaaggatctgatggtggcaggttgttcc
tggtcatctatttcagctctctgctcctctggttgccctctcctccgttctctggacctg
cggtacgcagatggggtcaaagactctcagatcagggatctagtcacccctccaggttgt
gacaatcgcagtcagttacggacaatgcagtgtttgcggctagcaggcctggacattagt
gactccactctgcgcctggtgattcgccacatgccccatttaacaaaactggacctctcc
cactgcaacagcctcaccgaccactccgtcaacctgctgactgcagtgggctcatccacc
cgaaacacgctcactgaactcaacctgggaggttgcagtaaactgacagacctgtgtctc
aagtatctccgccgcctctcttgcatctcactgctcgacctgcgaggctctaaaggtgtc
tcccgcaaggcctgtgaggccttcatctctgagctgtcagtcaacacgctctactgccta
tcagatgaaaagctgatccagaggatatcctaa
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