Etheostoma spectabile (orangethroat darter): 116704846
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Entry
116704846 CDS
T08457
Symbol
slit1
Name
(RefSeq) slit homolog 1 protein isoform X1
KO
K06838
slit 1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116704846 (slit1)
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Axon guidance molecules
116704846 (slit1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_4
LRR_5
EGF
Laminin_G_2
Laminin_G_1
hEGF
LRR_1
LRR_9
LRRCT
LRRNT
EGF_TEN
LRR_14
LRR_EndoS
EGF_Teneurin
EGF_DL_JAG
LRR_NXF1-5
EGF_3
Laminin_G_3
Motif
Other DBs
NCBI-GeneID:
116704846
NCBI-ProteinID:
XP_032396389
LinkDB
All DBs
Position
17:complement(13050895..13139100)
Genome browser
AA seq
1549 aa
AA seq
DB search
MPVRGSCFGAGMGRLAGQPLWMWVVMLSALLMGNASACPALCTCSGTTVDCHGLGLKTMP
RNIPRNTERLELNGNNLTRITKSDFAGLKYIRVLQLMENQIAVIERGAFDDMKELERLRL
NRNQLQQLPELLFQKNPALSRLDLSENFIQSIPRKAFRGATDIKNLQLDKNHISCIEDGA
FRALRGLEVLTLNNNNISSIPVSSFNHMPKLRTFRLHSNNLNCDCHLAWLAQWLRQRPTI
GLFTQCTAPSELRGLNVAEVQKHEFSCSGHHDSSSPQPCSIGGGSCPAMCTCSNNIVDCR
GKGLTAIPANLPDTMAEIRLEQNGIKSVPPGAFSPYKKLRRIDLSNNQISEIAPDAFQGL
RSLNSLVLYGNKITDLPKGVFDGLYALQLLLLNANKIHCVRANAFQDLQNLSLLSLYDNK
IQTLAKGTFTSLRAIQTLHLAQNPFICDCNLKWLADYLRSNPIETSGARCASPRRLANKR
IGQIKSKKFRCSAKEQYFIPGTEDTRLNNACNSDPVCPPKCRCESNVVDCSNLKLVKIPE
HIPSSTSELRLNNNEITALEATGVFKNLSQLKKINLSNNKITEIEDGSFEGASSVNELHL
TANQIDSVRSGMFRGLEGLRMLMLRNNKISCVHNDSFTGLHNVRLLSLYDNQLTTITPGA
FDTLQTLSTLNLLANSFNCDCRLAWLGDWLRSRKIVTGNPRCQRPAFLKEIPLQDVALPD
FRCEEGQEEVSSCVPKPQCPSECTCLETVVRCSNKHLHTLPKGIPRNVTELYLDGNQFSI
LPKELSTFKYLQLVDLSNNKINSLTNSSFANMSQLTTLILSYNSLRCIPKMAFSGLHSLR
LLSLHGNEISELPDGIFNDVASLSHLAIGANPLHCDCHMRWLSDWVKTSYKEPGIARCAG
PQGMEGKLLLTTPAKKFECTGDVDTTVLAKCNPCLSSPCLNQGICHSDMVEIYRCSCPPG
FKGKNCETALNACVSNPCANGGTCQVNEDEEGEYSCTCPLGFEGPNCQTNIEDCEDNDCE
NGATCLDGVNNYTCFCPPYYTGEMCEEMEDVCAPGRNPCQHQSTCLITSAGPKCVCSPGY
VGDDCSLDYNDCEEHRCQNGAQCVDELNGYSCVCLEGYNGQLCEVPPSPLSLCELADCQN
NAPCVERGGRALCQCPPEFGGPRCEKLVSVNFIDRDSYLLLSDLKNWPQANITLQVSTAE
DNGILLYNGDNDHIAVELYQGHVKVSYDPGSQPGHAIYSTETINDGQFHTVELVTFDQMV
NLSIDGGLPTTMDSFGAVRPLNGEAPLYVGGRGPLQNTPPSSAGMPVGVHSGAFRLWQLQ
NGSSFHGCIQNLYINNELQDFTKTQMKPGVVPGCEPCKKIYCVHGICQPDGVQGPVCHCQ
PGWSGPQCDQPATNPCQGSKCVHGKCIPLDTQSYRCECVEGYRGALCNQHGELFNPCRRL
SCKHGRCQISDTGDAYCHCESGYTGELCDAESECRGEPVRDFYQVQRGYAICQTTRMVSW
VECTGLCDTGACCASQRMKRRKYTFECSDGTSFSEEVEKTIKCGCVGCM
NT seq
4650 nt
NT seq
+upstream
nt +downstream
nt
atgcccgtcagaggtagctgttttggggcaggcatgggcaggctggccggacagccactc
tggatgtgggtggtgatgctctctgctctgctcatgggcaatgccagcgcctgcccagcc
ctgtgtacctgcagtggcaccacagttgactgccatggactgggactcaaaaccatgcca
aggaatatcccccgcaacactgaaagactggagctgaatgggaataaccttacacgcatc
accaagagtgacttcgctggacttaagtacattcgagttctgcagctgatggagaaccag
attgctgtgatcgagcgaggggcttttgatgacatgaaggagctggagagactgcggctg
aaccgtaatcaactgcagcagcttcctgagttgctctttcagaagaaccctgccctgtct
cgactagatctgagtgagaacttcatccagtccatccccagaaaagcatttagaggagct
acagacatcaaaaacctacagctagataaaaaccacatcagctgcattgaggatggagcc
ttcagagctctcagaggcttggaagtgctaacgctgaacaacaacaacatcagcagcatc
cccgtctccagcttcaaccacatgcccaagctacgaaccttccgtctccattccaacaat
ctgaactgtgactgtcacctggcgtggttggcccagtggctcagacaaaggcctacaatt
ggtctattcacccagtgcactgccccttctgagctcagagggctcaatgtggcagaggta
cagaaacacgaattcagctgctcaggtcaccatgactcttccagccctcagccgtgcagc
attggcggaggctcttgccccgccatgtgtacctgcagtaacaacatcgtggattgtaga
gggaaaggtctcaccgccatcccagccaacctgcctgacaccatggctgagatacgtctg
gagcagaatgggattaagtctgttcctccaggagccttctctccctacaagaaactgcgt
aggatagaccttagcaacaaccagatctcagagatagctcctgatgccttccagggcctg
cgctccctcaactcccttgtgctgtatggaaataagatcaccgacctgcccaagggggtg
tttgacggcctctacgccctgcaactgttgttgctgaatgccaataagattcactgcgtt
cgtgccaacgcctttcaggacctgcagaatctctcgctgctatcgctctatgacaacaag
atccaaacccttgccaagggcaccttcacttcactacgagctatacagacccttcacctg
gcccagaacccttttatttgtgattgtaatctgaagtggctggcggactacctgcgctcc
aaccccatcgagaccagcggtgcccgctgcgccagccctcgccgactcgcaaacaaacgt
attggacagatcaagagcaagaagttccgctgctccgccaaagagcagtacttcatccca
ggcacagaggacacccgtctgaataatgcctgtaacagtgatccagtttgtccccccaag
tgccgctgtgagtcgaacgtagtggactgctccaacctaaagctcgtcaagatccctgag
cacatcccttcatccacctctgaactccgccttaacaacaatgagatcacagctttggag
gcaactggagtgtttaaaaacctttcccagctgaagaaaattaacctcagcaacaacaag
atcacagagattgaagatggctcctttgaaggggcatcatccgtcaatgagcttcacctc
acggccaatcagattgactcggtccgaagcggaatgttccgaggcctcgagggactgcgc
atgctgatgctgaggaacaataagatcagctgcgtccacaatgacagttttacagggctg
cacaatgtccgcctgctgtctctgtacgacaaccagctcaccacaatcactcccggagcc
ttcgacactctgcagactctctccacccttaaccttttggccaactccttcaactgtgac
tgccggctggcctggctcggcgattggctgaggagtaggaagattgtgaccggtaatcct
cgctgccagcgtcctgcctttctgaaggagattcccctgcaggatgttgctctacctgac
ttccgctgtgaggagggccaagaagaggtgtcaagctgtgtgcccaaaccccagtgtccc
agtgaatgtacttgcctggagactgtagtgcgctgcagtaacaagcatctccacacgctg
cccaaaggcattcccagaaatgtgactgaactgtacctggatggaaatcagttcagtatt
ttaccaaaggaactgtctaccttcaaatacctacagctggtagacctgagcaacaacaag
atcaactccctgaccaactcgtccttcgctaacatgagccaactcaccactctaatcctg
agctacaactccctgcgttgtatccccaaaatggccttcagtggacttcactctctcaga
ctgctgtccctccatggcaatgaaatctcagagcttcctgatggcatcttcaacgatgtg
gcctcactttcccacttggcaattggtgccaaccccttgcactgtgactgtcacatgcgc
tggctatctgactgggtgaagactagctacaaagagcctggcattgcccgttgcgctggc
ccgcagggcatggagggaaaactgcttctcaccacacctgctaagaaatttgaatgtaca
ggtgatgtggacaccacagtgctggccaagtgtaacccttgtctgtccagtccctgtttg
aaccaaggcatctgtcatagcgacatggtggagatctacaggtgcagctgccctccagga
tttaagggcaagaactgtgagactgctttgaatgcttgtgtaagtaacccatgtgccaac
ggaggaacctgtcaagtgaatgaggatgaggagggagaatacagttgcacatgtccactg
ggctttgagggccccaattgccaaaccaacattgaagactgcgaggacaacgactgtgag
aacggagcaacgtgcctcgatggtgtcaacaactacacttgtttttgtcccccctactac
acaggggagatgtgtgaagaaatggaggatgtgtgtgccccaggacggaacccctgccaa
catcagtctacctgcctcatcacctccgctggaccaaagtgtgtgtgctctcctggttat
gttggtgatgactgcagtttagactataatgactgtgaggagcatcgttgtcagaatgga
gctcagtgtgtggatgagctaaatggatactcttgcgtctgtcttgaaggatacaatggt
cagttgtgtgaggtacccccatctccactgtccctgtgtgagctggcagactgccagaac
aacgccccatgtgtggagcgaggcgggcgtgccctctgccagtgtcctccagagtttggg
gggccacggtgcgagaagctggtcagcgtcaacttcattgacagagactcttacctgctg
ctctctgacctcaagaactggccacaagctaacatcaccttacaggtgtcaacagctgag
gacaatggcatcctgctgtacaatggagacaatgatcatattgcagtggagctctaccaa
ggtcatgtcaaggtcagctatgaccccggcagccaaccaggacatgccatctacagcact
gagactatcaacgatggccagttccacacagtggagctagtgacctttgaccagatggtg
aacctgtccattgacgggggcctccctaccacaatggacagctttggggcggtgcggccc
ctcaacggggaggctccactatacgtggggggtaggggccctctccagaacacacctccc
tcctctgcaggcatgccagtgggtgtacactcaggtgctttccgtctctggcagctccag
aacggttccagtttccatggctgtatccagaacctgtacatcaacaatgagctccaggac
ttcaccaaaacccagatgaagcctggcgtggtacccggctgcgagccctgcaagaagatc
tactgtgtacatggcatctgccagcctgatggggtccaaggaccagtgtgccactgccag
ccaggctggagcgggccgcaatgtgaccagcctgctaccaacccctgccagggcagcaag
tgtgtccatggaaagtgcatcccactggacactcagtcgtatcgctgcgagtgtgtggag
ggttaccgcggtgccctgtgtaaccaacatggggagcttttcaacccctgccgtcgcctg
tcctgcaagcacggccgctgccagatctcagacacaggagacgcctactgtcactgcgaa
agtggctacactggggaactatgtgacgcagagtctgaatgcagaggggaacctgtgcga
gacttctaccaggtacagcgaggctacgccatctgccagacgacacgcatggtctcttgg
gtggagtgcaccgggctttgcgacactggggcttgctgcgccagccagcgaatgaaacgc
cggaaatacacctttgaatgcagtgatggaacctccttcagcgaggaagtggaaaagacc
atcaagtgcggctgcgtgggctgcatgtag
DBGET
integrated database retrieval system
