Etheostoma spectabile (orangethroat darter): 116706057
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Entry
116706057 CDS
T08457
Name
(RefSeq) thrombospondin-1-like
KO
K16857
thrombospondin 1
Organism
esp
Etheostoma spectabile (orangethroat darter)
Pathway
esp04115
p53 signaling pathway
esp04145
Phagosome
esp04148
Efferocytosis
esp04350
TGF-beta signaling pathway
esp04510
Focal adhesion
esp04512
ECM-receptor interaction
esp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
esp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
116706057
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
116706057
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
116706057
04148 Efferocytosis
116706057
09143 Cell growth and death
04115 p53 signaling pathway
116706057
09144 Cellular community - eukaryotes
04510 Focal adhesion
116706057
09142 Cell motility
04820 Cytoskeleton in muscle cells
116706057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
esp04131
]
116706057
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
esp00536
]
116706057
Membrane trafficking [BR:
esp04131
]
Endocytosis
Phagocytosis
Opsonins
116706057
Glycosaminoglycan binding proteins [BR:
esp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
116706057
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
EGF_3
Laminin_G_3
cEGF
TSP1_ADAMTS
EGF
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
116706057
NCBI-ProteinID:
XP_032398534
LinkDB
All DBs
Position
18:6768619..6781570
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AA seq
1169 aa
AA seq
DB search
MKLTGIFLLLMFWTCESARVAESRDDNSVYDLFELVKVPKKNHGVTLVKGDDPYSPAYKI
LNPDLIPPVPESAFRDLIDSIHAERGFLLLLNFKQFKRTRGSLLTVEKQDGSGPVFEIVS
NGKANTLDIVFSTENKQQVVSIEDVDLATGHWKNITLFVQEDWAQLYAGCEEVSTAELDA
PIQSILTQETPDSAQLRIGKGAVKDRFMGVLQNVRFVFGASLEAILRNKGCQSSMTTDSM
ILENLNGSSAIRTEYTGHKTKDLQMVCGFSCEDLVSMFKELKGLGVVVKELSNELRQLTD
ENKLIKNRIGIHSGVCIHNGIVHKNRDEWTVDDCTECTCQNSATVCRKISCPLIPCANAT
VPDGECCPRCGTPSDYAEDGWSPWSEWTHCSVSCGRGIQQRGRSCDRINNNCEGTSVQTR
DCYLQECDKRFKQDGSWSHWSPWSSCSVTCDAGVITRIRLCNSPTPQLGGKDCEGEGRQT
EKCQKSQCPINGNWGPWSPWDTCTLTCGGGLQTRKRLCNDPAPKYGGKECVGNAKDTQLC
NKKACPIDGCLSNPCFAGSKCTSFPDGSWKCGKCPAGYTGNGIKCKDVDECKEVPDACFE
FNGVHRCENTDPGYNCLPCPPRYSGPQPFGRGVEQAVAKKQVCTPRNPCLDGSHDCNKNA
RCNYLGQFADPMYRCECKPGYAGNGHICGEDTDLDGWPNADLVCVENATYHCKKDNCPNL
PNSGQEDYDKDDIGDACDNDDDNDGIPDDRDNCPFVYNPRQYDYDRDDVGDRCDNCPYNS
NPDQTDTDSNGEGDACAVDIDGDGILNEKDNCPYVYNVDQRDTDLDGVGDMCDNCPLEHN
PDQVDSDDDRVGDKCDSNQDIDEDGHQNNLDNCPYISNANQVDHDKDGKGDACDHDDDND
GIPDDKDNCRLAFNPDQLDSDGDGRGDACKNDFDQDNVPDIYDVCPENFDISETDFRKFQ
MVPLDPKGTSQIDPNWVVRHQGKELVQTVNCDPGIAVGYHEFNSVDFSGTFFINTERDDD
YAGFVFGYQSSSRFYVVMWKQITQTYWSNKPTKAQGYSGLSIKVVNSTTGPGEHLRNALW
HTGNTPGQVRTLWHDPKNVGWKDFTAYRWHLIHRPRTGLIRVVMYEGKKIMADSGSLYDK
TYAGGRLGLFVFSQEMVYFSDLKYECRDV
NT seq
3510 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgacagggatatttttgctattgatgttttggacctgcgagagtgcgcgagtc
gcagagagccgagacgacaatagcgtgtatgacttgtttgagctcgtcaaagtcccgaaa
aagaaccacggggtcaccctagtgaaaggagacgacccgtacagccccgcctacaagatc
ctcaacccggacctgatccccccagtccccgagagcgcctttagggacttgatcgactcc
atccacgccgagaggggattcctcctcctgctcaacttcaagcagttcaagcggaccagg
ggaagcctcttgaccgtggagaagcaggacggttccggacccgtgttcgagatcgtctcc
aacggcaaggcgaacaccttagacatcgttttctccaccgagaacaagcaacaggtggtt
tccattgaagatgtggatctggccacgggccactggaagaacatcacgttgttcgtgcag
gaggactgggcgcagctgtacgcgggatgcgaggaggtgagcaccgccgagttggatgcg
cccatccagagcatcctgacgcaggagaccccggacagcgcgcagctccggatcgggaag
ggagccgtgaaggatagattcatgggggtcctgcaaaacgtgcggtttgtgtttggagca
tcactagaggccatcctccgtaacaaaggatgccagagctccatgacgactgactcaatg
attctggagaacctcaatggttcctctgccattagaacagagtacactggacacaagact
aaagacctgcagatggtctgcggcttctcctgtgaggacctggtcagcatgtttaaggag
ctgaagggcctcggtgtggtggtcaaggagctgtccaatgaactccgccaactgacggat
gagaacaagctgattaagaaccgcattggcattcacagtggcgtctgcatccacaacggc
attgtacacaagaaccgagacgagtggaccgtcgatgactgcaccgagtgcacttgtcag
aactccgctactgtgtgccgcaagatctcctgcccccttattccctgtgctaatgctact
gttcctgatggagagtgctgtccacgctgtggaacaccgagcgactatgcagaggacggc
tggtcgccgtggtctgaatggacccattgttccgtgtcttgtgggcggggcatccagcag
cgtgggcgctcttgcgaccgtatcaataacaactgcgagggcacctctgtgcagacccgc
gactgctacctccaggagtgtgacaagcgattcaagcaagacggcagctggagccattgg
tcaccatggtcatcctgctccgtcacctgcgatgctggtgtcatcacccgtatccgcctc
tgcaactcccccacccctcagcttggaggcaaggactgtgagggagagggccggcaaaca
gagaagtgtcagaaatctcagtgccccatcaatggcaactggggaccctggtcaccgtgg
gatacctgcactctcacctgtggaggtggtctccagactcgtaaacgcctgtgcaatgac
ccagcgccaaaatacggtggcaaagagtgcgttggtaatgctaaagacacccagctgtgc
aacaagaaagcctgtccaattgatgggtgcctgtctaacccctgctttgctggatccaag
tgcaccagtttccctgatggttcctggaagtgtggcaagtgcccagctggctacactggc
aatggtatcaagtgtaaagatgttgacgagtgcaaggaggtcccagacgcttgctttgag
tttaatggtgtgcaccgctgtgagaacacagatcctggctacaactgtctgccctgccct
cctcgctattcaggaccccaaccgtttggcagaggagtggagcaggctgttgctaagaaa
caggtgtgcacacctcgtaatccctgccttgatggaagccatgactgcaacaaaaacgcc
cgctgtaactacctcggacagtttgctgatcccatgtaccgctgcgagtgcaagcccggc
tatgctggcaacggccatatctgtggagaggacacagatctggatggatggcccaacgct
gacttggtctgtgtggagaatgccacctaccactgcaaaaaggacaactgtcccaacctc
cccaactctgggcaagaagattacgataaggacgacattggagatgcttgtgacaatgat
gacgacaatgatggcattcctgacgatagggataactgtccattcgtgtacaaccccagg
cagtatgactacgaccgcgacgacgtgggtgaccgctgtgacaactgcccctacaatagt
aacccagaccaaacagacacagacagcaatggagagggagacgcctgcgctgttgacatt
gatggagatggcatattaaacgagaaggacaactgcccctatgtgtacaatgtcgaccag
agagacacagatctggatggagtgggagacatgtgtgataactgccctctagaacataat
cctgatcaggtggattcagatgatgaccgggtgggagacaagtgtgacagcaaccaggac
atcgatgaggacggacaccagaacaacctggacaactgcccatacatctccaatgccaac
caggttgaccatgacaaggatggcaagggagacgcatgtgaccatgatgacgacaacgac
ggcatccctgatgacaaggacaattgcagactggccttcaaccctgaccaactggactct
gatggtgatggccgtggagatgcttgcaaaaatgactttgaccaagacaatgtgcccgac
atctatgatgtgtgtcccgagaactttgacattagtgagacagacttccgcaagttccag
atggttcctctggaccccaaaggcacctcgcagattgatcctaactgggtcgtccgccat
cagggcaaagagctggttcagactgtcaactgcgaccctggcatcgctgttggttaccac
gaattcaattcagtggacttcagtgggactttcttcatcaacacagagagggatgatgat
tacgctggctttgtgttcggctaccagtccagttccaggttctacgtggtgatgtggaaa
cagattacgcagacatactggtctaataaacccaccaaagcccagggctactctggcctg
tccatcaaagtggttaactccaccactggcccaggagagcacctgaggaacgccctgtgg
cacacaggaaataccccaggacaggtccgcactctctggcacgaccctaagaacgttgga
tggaaagacttcaccgcctacagatggcatctgatccacagaccgagaacaggacttatt
agagtcgtgatgtatgagggcaagaagatcatggcagattctggtagcctctatgacaaa
acgtacgcaggtggcaggctaggtctttttgtcttctcacaagagatggtatacttttca
gacctcaagtatgaatgcagagatgtctaa
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