Eubacterium siraeum V10Sc8a: ES1_19960
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Entry
ES1_19960 CDS
T02589
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
esr
Eubacterium siraeum V10Sc8a
Pathway
esr03030
DNA replication
esr03410
Base excision repair
esr03420
Nucleotide excision repair
esr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
esr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ES1_19960
03410 Base excision repair
ES1_19960
03420 Nucleotide excision repair
ES1_19960
03430 Mismatch repair
ES1_19960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
esr03032
]
ES1_19960
03400 DNA repair and recombination proteins [BR:
esr03400
]
ES1_19960
Enzymes [BR:
esr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ES1_19960
DNA replication proteins [BR:
esr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ES1_19960
DNA repair and recombination proteins [BR:
esr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ES1_19960
NER (nucleotide excision repair)
GGR (global genome repair) factors
ES1_19960
MMR (mismatch excision repair)
DNA ligase
ES1_19960
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ES1_19960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
5_3_exonuc
COMM_HN
Motif
Other DBs
NCBI-ProteinID:
CBL34877
UniProt:
D4MM94
LinkDB
All DBs
Position
complement(2152870..2154852)
Genome browser
AA seq
660 aa
AA seq
DB search
MDKEQIKSEYEQLCREVEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIVSESSP
TQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERVKKAVGKAVYCVEPKIDGLSV
SLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMELNEKIPFIEVRGEVYMPKADFEK
LVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIEGRELTCHSESLD
YMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDNFELRNELGSTA
KVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSRAVLHNQDYI
DSKDIRIGDIIAVRKAGDIIPEVVRSVSHAENSEPFIIPHICPVCHGKAERAEDEAVIRC
VNIDCPAQLLKNIEHFASRPAMNIDGLGEAVVKQLVENRLISTVADLYSLQQQDLEMLPG
FAKVSASKLIANIENSKANSPDRLLFALGIKGIGQKNAQLLMKHFGSIEKLSETLPEEIS
AVENFGDILANNIFTALHEPHMTELIERLKSYGVNTVYQSDVKSDKLAGLTFVITGTLPD
MTRDEAKTLIEQNGGKCSGSVSRKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMIGE
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggataaagagcagataaaaagtgaatacgaacagctttgcagagaggtcgaacagcac
aatttcaactactatgttcttgacgatcctactatagaggacgatgagtacgacaggctg
atgagaagaataaaggagatagaagcggaaaatcccgaaattgtttccgaaagttctccc
acacagcacgtcggcggatatgccatcaacacattcgagaaagtaactcacgaggtgcag
atgggaagcctgcaggatgtattctcaaaaggcgagttgtatgaatttgacgagcgtgtg
aaaaaagccgtaggcaaggctgtatactgcgttgaacccaagatagacggcttatctgtt
tcacttgaatacaaggacggaatattcacaagaggctctacacgaggcgacggctttgtt
ggcgaggacatcactaaaaatctgaaaaccataaagtcgatacctatggagcttaacgaa
aagataccctttatagaagtcaggggagaggtgtatatgccaaaagccgactttgaaaag
ctggtcagaaaacagcttgagaacgatgaacagccggctaagaatccccgtaacgccgcc
gcaggctcactgcgccagaaagacagcagggtgacagcttcaagaggacttgatatattc
gtattcaatcttcagcgtatcgagggcagagagcttacctgccacagcgagagccttgac
tatatgaagtcgctcggcttcaacgtgatagacggctataagacctttgataatatcgaa
gacgccgtttcacgcattatggagataggcgagaacagacagagttattcctacgatatt
gacggtgcggtcataaaggtcgataattttgaactcagaaacgagctcggcagtaccgca
aaggtgccgaagtgggcggtagcattcaaatatccccccgaagaaaaggaaacgaaattg
cttgatatagagataaacgtcggcaggacgggcgcactcactcccgttgccgtattcgaa
cctgtatggcttgcaggtactaccgtatcaagagcggtgcttcataatcaggactatatc
gacagcaaggatataagaataggcgatattatcgctgtccgcaaggcaggggatattatc
cccgaggttgtaagaagcgtaagccacgccgaaaacagcgagccgttcattataccccat
atctgtcccgtttgtcacggaaaggctgaaagggcggaggacgaggcggttatccgctgt
gtgaacattgattgccccgcacagcttcttaaaaatatcgagcatttcgcctcaagaccg
gctatgaatatcgacgggctgggagaagcggtagtaaaacagcttgtagaaaacagactt
ataagcactgttgccgatctttactctcttcaacagcaggaccttgaaatgctgccgggc
tttgcgaaggtttcggcttcaaagctgattgcaaatatcgaaaactcaaaagcgaattct
cccgacaggcttttattcgcactcggaataaagggtataggtcagaaaaacgcacagctt
ctgatgaagcacttcggcagtatagaaaagctgtcggaaactttgcccgaagaaatttcc
gctgtagagaatttcggtgatattcttgcaaataacatcttcactgcactccacgagcca
catatgacagagcttatcgaaaggctgaaatcttacggcgtgaacacggtatatcagtct
gatgtaaagagcgacaagctggcaggtctgacatttgttataacgggaacgctccccgat
atgacaagagatgaggcaaaaacgcttatagagcagaacggtggcaagtgcagcggctcg
gtttccaggaaaacaagctacgttctcgcaggcgaggaagcaggaagcaagctgacaaaa
gcacaacagctcggcgttacggtcataagtcagcaacagcttattgaaatgataggtgaa
taa
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