Empedobacter stercoris: HNV03_05225
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Entry
HNV03_05225 CDS
T06804
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
este
Empedobacter stercoris
Pathway
este03030
DNA replication
este03410
Base excision repair
este03420
Nucleotide excision repair
este03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
este00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HNV03_05225 (ligA)
03410 Base excision repair
HNV03_05225 (ligA)
03420 Nucleotide excision repair
HNV03_05225 (ligA)
03430 Mismatch repair
HNV03_05225 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
este03032
]
HNV03_05225 (ligA)
03400 DNA repair and recombination proteins [BR:
este03400
]
HNV03_05225 (ligA)
Enzymes [BR:
este01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HNV03_05225 (ligA)
DNA replication proteins [BR:
este03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HNV03_05225 (ligA)
DNA repair and recombination proteins [BR:
este03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HNV03_05225 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HNV03_05225 (ligA)
MMR (mismatch excision repair)
DNA ligase
HNV03_05225 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HNV03_05225 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH
5_3_exonuc
BRCT_2
HVO_2753_ZBP
Auto_anti-p27
TF_Zn_Ribbon
zf-tcix
Motif
Other DBs
NCBI-ProteinID:
QNT14104
UniProt:
A0A9Q6V6I1
LinkDB
All DBs
Position
complement(1081336..1083330)
Genome browser
AA seq
664 aa
AA seq
DB search
MEIQDKILALREELTQHNYNYYVLDKPTISDFEFDLKLKELKRLEDENPLFFDINSPTQR
VGGMVTKNFPTIAHEFRMYSLDNSYSVEDLQDWEKRIEKTLDEAVEFVCELKYDGASISI
LYENGELTQAVTRGDGTQGDEITNNIRTIQSVPLKLKGNYPERFFMRGEITIPLNKFAAI
NEERAQNGLELYANPRNTASGSLKLQDNTEVAKRGLQCFPYYFIGNNLPYSTQWEMLQAA
DELGFKIPHTSKLCTSLEEVLAFVDYWDIERKNLPYETDGVVIKVNSFSQQDELGYTAKS
PRWAMAYKFKAEAAETELLSIDYQVGRTGAITPVANLSPVSLAGTIVKRASVHNEDIIKK
LDIRIGDIVYVEKGGEIIPKIVGVNTDVRQPGTEEIEFIKECPSCGTELIRNEGEAQHYC
PNENGCEPQIIGKLEHFVSRKAMDIESIGAETAVLLHNANLLNNIADFYTLQKEAILPLD
RMAEKSAQNIITSVEKSKEQPFEKVLYAIGIRHVGETVAKKLVKHFQNIDRLMQATMEEL
VAVPDVGEKIAFSIKEYFKEEQHQNLIQRLRDYGLNFEIGEEAKPLSNSLEGKTFLFTGS
LTKFTRNEAQKMVEDHGGKNISAVSKNLNFLVAGDKAGSKLKKAEEIGTVVVLTEDEFLT
MIKS
NT seq
1995 nt
NT seq
+upstream
nt +downstream
nt
atggaaattcaagataaaattttagctttaagagaagagcttactcagcataattataat
tattacgttttagataaaccgacgatttctgatttcgaatttgatttgaaattaaaagaa
ttaaaacgtttagaagacgagaatcctttgttttttgatatcaactcccctactcaacga
gttggaggcatggtgacaaaaaactttccaaccattgcacacgaatttagaatgtattcg
ttggataactcgtactcagtagaagatttacaagactgggaaaaaagaattgaaaagacg
cttgacgaagctgtagaattcgtttgtgaattgaaatacgatggtgcttcaatttctatt
ttatacgaaaatggtgagttaactcaggctgtaacacgtggagatggaacacaaggtgat
gaaatcacgaataatattcgtaccatacaatctgttcctttaaaattgaaaggtaattat
cccgaacgtttttttatgcgtggagagattactataccgctaaataaatttgcagctatt
aacgaagaacgcgctcaaaatggattagaattgtatgcaaatcctcgtaataccgcctca
ggttcattgaaattacaagataataccgaagttgctaaacgtggtttgcaatgctttccg
tattattttattggaaataatttgccgtattctacacaatgggaaatgctacaagccgcg
gatgagttaggatttaaaattccacatacatctaaattatgtacttccttggaagaagtt
ttagcttttgttgactattgggatattgaacgtaaaaatttgccctacgaaacggatgga
gttgtaattaaagtcaattctttttcacaacaagatgaattaggttatactgcaaaatca
ccacgctgggcgatggcctataaatttaaagcagaagctgctgagactgaattattaagt
attgattatcaagttggacgcacaggagcaattacgccagtagctaatctttcacctgtt
tcgttggctggtacaattgtaaaacgtgcatctgttcataatgaagacatcatcaaaaaa
ttggatatccgcattggcgatatagtttatgttgaaaaaggtggagaaattattccaaaa
atagtaggtgtcaatacagacgtacgtcaacctggaacggaagaaatagagtttattaaa
gaatgtccttcttgtggaacagaactaattcgaaacgaaggcgaagcacaacattattgt
ccaaacgaaaatggttgtgaaccacagattattggaaaattagagcattttgtttcgaga
aaagcaatggatattgaaagcattggtgctgaaactgcagttttattgcacaacgcaaat
ttactcaacaatattgctgatttttataccttacaaaaagaagctattttacctttggat
agaatggccgaaaaatcggctcagaatattattacatctgttgaaaaatcgaaagaacaa
cctttcgaaaaagtattatatgccatcggaattcgtcatgttggtgaaacggttgcgaag
aaattagtcaaacactttcagaatattgaccgactaatgcaagctactatggaagaattg
gttgctgtaccagatgttggagaaaaaattgctttttcaatcaaagaatattttaaagaa
gaacaacatcaaaatctaattcaacgtttacgtgattatggattaaattttgaaattggt
gaagaagcaaaaccattatccaattcattagaagggaaaacatttttgtttacgggaagt
ttaaccaaatttacacgaaacgaagcacagaaaatggtagaagaccatggaggaaaaaat
atttcggctgtttctaaaaatttaaatttcttagttgctggagataaagcaggtagtaaa
ttaaaaaaagctgaggaaattggaactgtagtggtcttgacagaagatgaatttttaact
atgataaaaagctaa
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