Eubacterium siraeum 70/3: EUS_11250
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Entry
EUS_11250 CDS
T02590
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
esu
Eubacterium siraeum 70/3
Pathway
esu03030
DNA replication
esu03410
Base excision repair
esu03420
Nucleotide excision repair
esu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
esu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
EUS_11250
03410 Base excision repair
EUS_11250
03420 Nucleotide excision repair
EUS_11250
03430 Mismatch repair
EUS_11250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
esu03032
]
EUS_11250
03400 DNA repair and recombination proteins [BR:
esu03400
]
EUS_11250
Enzymes [BR:
esu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
EUS_11250
DNA replication proteins [BR:
esu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
EUS_11250
DNA repair and recombination proteins [BR:
esu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
EUS_11250
NER (nucleotide excision repair)
GGR (global genome repair) factors
EUS_11250
MMR (mismatch excision repair)
DNA ligase
EUS_11250
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
EUS_11250
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
Nlig-Ia
5_3_exonuc
SPO24
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
CBK96313
UniProt:
D4JT94
LinkDB
All DBs
Position
1122767..1124749
Genome browser
AA seq
660 aa
AA seq
DB search
MDKEQIKSEYEQLCKQAEQHNFNYYVLDDPTIEDDEYDRLMRRIKEIEAENPEIVSESSP
TQHVGGYAINTFEKVTHEVQMGSLQDVFSKGELYEFDERVKKAVGKAVYCVEPKIDGLSV
SLEYKDGIFTRGSTRGDGFVGEDITKNLKTIKSIPMVLREKIPFIEVRGEVYMPKADFEK
LVRKQLENDEQPAKNPRNAAAGSLRQKDSRVTASRGLDIFVFNLQRIEGRELTCHSESLD
YMKSLGFNVIDGYKTFDNIEDAVSRIMEIGENRQSYSYDIDGAVIKVDDFELRNELGSTA
KVPKWAVAFKYPPEEKETKLLDIEINVGRTGALTPVAVFEPVWLAGTTVSRAVLHNQDYI
DSKDIRIGDIIAVRKAGDIIPEVVRSVSHAENSEPFVIPHICPVCHGKAERAEDEAVIRC
VNIDCPAQLLKNIEHFASRPAMNIDGLGEAVVKQLVENRLISTVADLYSLQQQDLEMLPG
FAKVSASKLIANIENSKTNSPDRLLFALGIKGIGQKNAQLLMKNFGSIEKLSETSSEEIS
AVENFGDILANNIFTALHEPHMTELIERLKSYGVNTVYQSDVKSDKLAGLTFVITGTLPD
MTRDEAKTLIEQNGGKCSGSVSKKTSYVLAGEEAGSKLTKAQQLGVTVISQQQLIEMIGE
NT seq
1983 nt
NT seq
+upstream
nt +downstream
nt
atggataaagagcagataaaaagtgaatacgaacagctttgcaagcaagccgaacagcac
aatttcaactactatgttcttgacgatcctactatagaggacgatgagtacgacaggctg
atgagaagaataaaggagatagaagcggaaaatcccgaaattgtttccgaaagctctccc
acacagcacgtcggcggatatgccatcaacacattcgagaaggtaactcacgaggtgcag
atgggaagcctgcaggatgtattctcaaaaggcgagctgtatgaatttgacgagcgtgtg
aaaaaagccgtaggcaaggctgtatactgcgttgaacccaagatagacggcttatctgtt
tcacttgaatacaaggacggaatattcacaagaggctctacacgaggcgacggctttgtg
ggcgaggacatcactaaaaatctgaaaaccataaagtcaatacctatggtacttcgcgaa
aagataccctttatagaagtcaggggagaggtgtatatgccaaaagccgactttgaaaag
ctggtcagaaaacagcttgagaacgatgaacagccggctaagaatccccgtaacgccgcc
gcaggctcactgcgccagaaagacagcagggtgacagcttcaagaggacttgatatattc
gtattcaatcttcagcgtatcgagggcagagagcttacctgccacagcgagagccttgac
tatatgaagtcgctcggcttcaatgtgatagacggctataagacctttgataatatcgaa
gatgccgtttcacgcattatggagataggcgaaaacagacagagttattcctacgatatt
gacggtgcggtcataaaggtcgatgattttgaactcagaaacgagctcggcagtaccgca
aaggtgcctaagtgggcagtagcgttcaaatatccccccgaagaaaaggaaacgaaactg
cttgatatagagataaatgtcggcaggacgggcgcactcactcccgttgccgtgttcgag
cctgtatggcttgcaggtactaccgtatcaagagcggtgcttcataatcaggactatatc
gacagcaaggatataagaataggcgatattatcgctgtccgcaaggcaggagatattatc
cctgaggttgtacgaagcgtaagccacgccgaaaacagcgagccgttcgttatacctcat
atctgtcccgtttgtcacggaaaggcggaaagggcggaggacgaggcggttatccgctgt
gtgaacattgattgccccgcacagcttcttaaaaatatcgagcatttcgcctcaagaccg
gctatgaatatcgacgggctgggagaagcggtagtaaaacagcttgtagaaaacagactt
ataagcaccgttgccgatctttactcgcttcaacagcaggaccttgaaatgctgccgggc
tttgcaaaggtttcggcttcaaagctgattgcaaatatcgaaaattcaaaaacgaattct
cctgacaggcttttattcgcactcggaataaagggtataggtcagaaaaacgcacagctt
ctgatgaagaacttcggcagtatagaaaagctgtcggaaacttcgtccgaagaaatttcc
gctgtagagaatttcggtgatattcttgcaaataacatcttcactgcactccacgagcct
catatgacggagcttatcgaaaggctgaaatcttacggcgtgaacacggtatatcagtct
gatgtaaagagcgacaagctggcaggtctgacatttgttataacgggaacgctccccgat
atgacaagagatgaggcaaaaacgcttatagaacagaacggcggcaagtgcagcggctcg
gtttccaagaaaacaagctacgttctcgccggcgaggaagcaggaagcaagctgaccaaa
gcacaacagctcggcgttacggtcataagtcagcaacagcttattgaaatgataggtgaa
taa
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