Escherichia sp. E4742: FEM44_02115
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Entry
FEM44_02115 CDS
T06276
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
esz
Escherichia sp. E4742
Pathway
esz03030
DNA replication
esz03410
Base excision repair
esz03420
Nucleotide excision repair
esz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
esz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FEM44_02115 (ligA)
03410 Base excision repair
FEM44_02115 (ligA)
03420 Nucleotide excision repair
FEM44_02115 (ligA)
03430 Mismatch repair
FEM44_02115 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
esz03032
]
FEM44_02115 (ligA)
03400 DNA repair and recombination proteins [BR:
esz03400
]
FEM44_02115 (ligA)
Enzymes [BR:
esz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FEM44_02115 (ligA)
DNA replication proteins [BR:
esz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FEM44_02115 (ligA)
DNA repair and recombination proteins [BR:
esz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FEM44_02115 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FEM44_02115 (ligA)
MMR (mismatch excision repair)
DNA ligase
FEM44_02115 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FEM44_02115 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH
RNA_ligase
Prok-E2_C
DZR_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
QCT86107
LinkDB
All DBs
Position
complement(432242..434257)
Genome browser
AA seq
671 aa
AA seq
DB search
MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELEAKHPELITPDSPTQ
RVGAAPLAAFSQIRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSNEKVTWCCELKLDGLA
VSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLQGENIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGVLEGGELPDTHL
GRLMQFKAWGLPVSDRVTLCESAEDVLAFYHKVEEDRPTLGFDIDGVVIKVNSLAQQEQL
GFVSRAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEDTREVVFPTHCPVCGSDVERVEG
EAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAG
KLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGEATAAGLAAYFGTLEALES
ASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAPVVINAEEIDSPFAG
KTVVLTGSLSQMSRDDAKARLVELGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEVI
DEAEMLRLLGN
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaatcgaacaacaactgacagaactgcgaacgacgcttcgccaccatgaatat
ctttatcatgtgatggatgcgccggaaattcccgacgctgaatacgacaggctgatgcgc
gagttgcgtgagctggaagccaaacatcctgagctgattacccctgattcacctacccaa
cgtgtaggtgctgcgccgctggcagcctttagccagatccgtcatgaagtacccatgctg
tctctggataacgtatttgatgaagagagttttctcgccttcaacaaacgcgtacaggac
aggcttaaaagcaacgaaaaagtgacctggtgctgcgagttaaagctcgatgggcttgcc
gtcagcattctgtatgagaatggtgtactggtaagcgcggcgacccgtggcgatggcact
actggggaagacatcacgtctaacgtgcgtaccattcgcgctattccgctgaaactgcaa
ggtgagaatattccagcacgtctggaagtgcgtggtgaagtgttcctgccgcaggcgggt
tttgagaagattaacgaagaggcgcgacgcacgggcggaaaagtgtttgctaacccacgt
aatgcggcggcaggttctctgcgtcagcttgatccgcgtattactgcgaagcgaccgctt
actttcttctgctatggcgttggtgtactggaaggtggcgagttgccggacactcatctg
ggccgcttaatgcagtttaaagcgtggggattaccagtcagcgatcgggtaacgctttgc
gaatcagcagaagacgtgctggcgttttaccacaaagtggaagaagaccgcccgacgctg
ggctttgatattgacggtgtagtcattaaggtcaactcgctggcgcagcaggagcaactt
ggctttgtttcccgcgccccgcgctgggctgttgcgtttaaatttccggcgcaggaacaa
atgacttttgtgcgtgatgtagagtttcaggttgggcgtacaggtgcgattacgcccgtt
gcgcgtctggaacctgtccatgttgcaggcgtgctggtgagcaacgctacactgcataat
gccgacgaaattgaacgtctcggtttacgcattggcgataaagtggtgattcgccgcgca
ggagacgtgatcccacaagtggttaacgtcgtgctttctgaacgcccggaagatacccgt
gaggttgtattcccgacgcattgtccggtatgtggttctgacgtggaacgtgtggaaggt
gaagcggttgctcgctgtactggtggcctgatttgcggtgctcaacgtaaagaatcgctg
aaacactttgtttcccgtcgtgcgatggatgttgacggaatgggtgacaaaattatcgac
cagctggttgaaaaagagtacgtccacactccggcggacctgttcaaactcaccgcaggc
aaacttaccgggctggagcgaatggggccgaaatcggcacaaaatgtggttaacgcgctg
gaaaaagcgaaagaaaccacctttgcccgcttcctctatgcacttggcatccgtgaagtc
ggtgaggctaccgcagccggtctggcggcatattttggcacgctggaagcgctggaatca
gcctcgattgaagagctgcaaaaagtgccagacgtcgggatcgtggtggcatctcatgtt
cacaacttctttgccgaagaaagcaaccgcaatgtcatcagcgagctgttggcggaaggc
gttcactggcctgcgccggtcgtcatcaacgcagaagagatcgacagtccgtttgccggt
aaaaccgtggtactcacgggtagcttaagtcagatgtcgcgtgatgacgccaaagctcgc
ctggtcgaactgggcgcgaaagtggcgggcagcgtgtcgaagaaaaccgatctggtgatc
gccggagaagccgcaggttctaaactggcgaaagcgcaggaactgggcattgaagtgatc
gacgaagctgaaatgctacgtttgctgggtaactga
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integrated database retrieval system
