Erwinia tasmaniensis: ETA_11030
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Entry
ETA_11030 CDS
T00711
Symbol
lig
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eta
Erwinia tasmaniensis
Pathway
eta03030
DNA replication
eta03410
Base excision repair
eta03420
Nucleotide excision repair
eta03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eta00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ETA_11030 (lig)
03410 Base excision repair
ETA_11030 (lig)
03420 Nucleotide excision repair
ETA_11030 (lig)
03430 Mismatch repair
ETA_11030 (lig)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eta03032
]
ETA_11030 (lig)
03400 DNA repair and recombination proteins [BR:
eta03400
]
ETA_11030 (lig)
Enzymes [BR:
eta01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ETA_11030 (lig)
DNA replication proteins [BR:
eta03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ETA_11030 (lig)
DNA repair and recombination proteins [BR:
eta03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ETA_11030 (lig)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ETA_11030 (lig)
MMR (mismatch excision repair)
DNA ligase
ETA_11030 (lig)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ETA_11030 (lig)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
Zn_ribbon_NUD
Prok-E2_C
Motif
Other DBs
NCBI-ProteinID:
CAO96149
UniProt:
B2VE40
LinkDB
All DBs
Position
1228523..1230535
Genome browser
AA seq
670 aa
AA seq
DB search
MESLQDKITHLRTLLRHYEYQYHVLDAPAVPDAEYDRLMGELRELEAAHPELLTTDSPTQ
RVGAAPLSAFEQVRHEVPMLSLDNAFDEESYRAFNKRVQDRLKSSDDLTFCCELKLDGLA
VSLLYEQGELVRAATRGDGTTGENITANVRTIRAIPLRLSGDNIPERLEVRGEVFMPLAG
FEKMNEQARRGGQKIFANPRNAAAGSLRQLDPRITAKRPLTFFCYGLGLLEGGEMPRSHM
ARLQQFKAWGLPVSDRVRLCHSPSDVLDFYHQVEADRPALGFDIDGVVIKVDSLEQQEQL
GFVARAPRWAVAFKFPAQEQITTVRDVEFQVGRTGAITPVARLEPVLVAGVMVSNATLHN
ADEIERLGLRIGDRVVIRRAGDVIPQVMSVVESAEGARDVIFPTHCPVCGSDVERVEGEV
VARCTGGLICGAQRKGALKHFVSRRALDIDGMGEKIIDQLVDKEYVKNPAELFELTAGKL
TGLDRMGPKSAQNVVDALAKAKQTTFARFLYALGISEVGEATAANLAAHFGTLEALMAAD
IDTLITVPDVGKVVASHVRNFLDEESNREIIRLLVEKAGVNWPDVVVVKAEEIDSPFAGK
TVVLTGSLSILSRDDAKERLQALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIDVID
EQEMMRLLGE
NT seq
2013 nt
NT seq
+upstream
nt +downstream
nt
atggaatccttacaagacaaaatcacccatttgcgaaccctgcttcgccattatgaatat
cagtatcatgtgctggatgcgccggcagtgccggatgcggaatacgatcgcctgatgggc
gagctgcgggagttggaggctgcacatccagagctgttgaccacggactcacctacccag
cgcgtaggggcagccccgctcagcgcttttgaacaggtgcgccatgaagtgcctatgctg
tcgctcgacaatgcctttgatgaagagagctaccgggcatttaataaacgcgtgcaggat
cggctaaaaagcagtgacgatctcaccttctgctgcgagctgaagctggacggtttggcg
gttagcctgctgtatgagcagggcgaactggtgcgtgcagccacccgtggcgatggcacc
acgggcgagaatattaccgccaacgtgcgtaccatcagagccattccactgcgtctgagc
ggcgacaacattcctgaacggctcgaggtgcgtggcgaagtgtttatgccgttggcaggg
ttcgagaaaatgaacgagcaggcgcgccgcggcggtcaaaagatattcgctaatccgcgt
aatgccgccgccgggtctttgcgtcagctcgatccgcgtatcaccgctaaacgcccgctc
accttcttctgctacggtctgggtctgctggaaggtggcgaaatgccgcgcagccatatg
gcgcgtctacagcagttcaaggcctgggggctgccggtcagcgaccgcgtgcgcctctgc
cacagtccgtcagacgttctggacttttaccaccaggttgaggcggaccgcccggcgctt
ggcttcgatattgatggcgtggtgattaaggtggacagcctggagcaacaggagcagctg
ggatttgtcgcgcgcgcgccgcggtgggccgtggcgtttaaattcccggcgcaggagcag
ataacaacggtacgtgacgtcgaattccaggttggacgtaccggagccattacgcctgtt
gccaggctggagccggtgctggtcgccggagtcatggtgagcaacgccaccctgcataac
gccgatgaaattgagcggctggggctgagaatcggcgatcgcgtggttattcggcgcgct
ggtgatgttattcctcaggtcatgagcgtagtggaatctgccgagggtgcgcgtgacgtt
atttttccaacgcactgcccggtgtgcggttcggacgtggagcgcgtagagggggaagtg
gtggcgcgctgcaccggcggcctgatttgcggcgcacagcgcaagggggctttaaaacac
ttcgtttcacgccgggcgctggatattgatggtatgggtgagaaaatcatcgaccagctg
gtggataaagaatatgtcaagaacccggcagagctgtttgagctgacggcgggcaagttg
accggactggatcgtatggggccgaaatcagctcagaacgtggtggatgcgctggcgaaa
gcgaagcaaactaccttcgcccgtttcctgtatgcgcttggcatcagcgaagtcggggag
gcaacggcggccaacctggcggctcattttggcacgctggaagcgctgatggcggccgac
attgatacgctgatcacggtaccggacgtgggcaaagtggtcgccagccacgtgcgcaat
ttccttgatgaagagagtaaccgcgaaattatccgcctgctggtggaaaaagccggagtg
aactggccagacgttgtggtggttaaagcggaagagatcgacagtccgtttgccggaaaa
accgtagtactgaccggttcactgagcattctttcccgcgatgatgccaaagagcgactg
caggcgctgggtgccaaagtcagcggcagcgtttcgaaaaagaccgatctggtgatcgcc
ggtgaggccgcaggctccaaactggctaaagcgcaggagctggggatcgacgtcattgat
gagcaggaaatgatgcgcttactcggtgagtga
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