Edwardsiella piscicida C07-087: ETAC_05460
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Entry
ETAC_05460 CDS
T02509
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
etc
Edwardsiella piscicida C07-087
Pathway
etc03030
DNA replication
etc03410
Base excision repair
etc03420
Nucleotide excision repair
etc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
etc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ETAC_05460 (ligA)
03410 Base excision repair
ETAC_05460 (ligA)
03420 Nucleotide excision repair
ETAC_05460 (ligA)
03430 Mismatch repair
ETAC_05460 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
etc03032
]
ETAC_05460 (ligA)
03400 DNA repair and recombination proteins [BR:
etc03400
]
ETAC_05460 (ligA)
Enzymes [BR:
etc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ETAC_05460 (ligA)
DNA replication proteins [BR:
etc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ETAC_05460 (ligA)
DNA repair and recombination proteins [BR:
etc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ETAC_05460 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ETAC_05460 (ligA)
MMR (mismatch excision repair)
DNA ligase
ETAC_05460 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ETAC_05460 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AGH73217
LinkDB
All DBs
Position
1249625..1251652
Genome browser
AA seq
675 aa
AA seq
DB search
MTPTIEQQLEQLRDALRHHEYQYYVLDEPQVTDAEYDRLMAQLKQLEAEHPALVTADSPS
QRVGGAPLAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHERLKSGEPLTFCCEPKLDGL
AVSLLYEQGMLVRAATRGDGSTGEDITANVKTIRAIPLRLQGEAIPTRIEVRGEVFMPQD
GFEAMNEEARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGSGLLEGGTLPDSH
YQCLQRFKSWGLPVSERVKLCCGSAEVLAYYRQTEQDRPGLGFDIDGVVIKVDDIAIQER
LGFVARAPRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVQVAGVTVSNATLH
NADEIERLDLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDALEIGFPTHCPVCGSEVERTE
GEAVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGDKVIEQLVDKEYVATPADLYRLSA
GKLTGLERMGPKSATKLIAALERSRETTLARFLFALGIREVGEATAANLASHFGSLQALR
AADLESLKRVPEVGEVVASHIVHFLSEAHNRQVIDELISDEVGIRWPEGAPAQSAPAIDS
PFAGKTVVLTGSLSVLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKANALG
IEVIDEAQMLRMLGA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgactcccacgattgaacaacaactcgaacagctgcgtgacgcgctgcgccatcatgag
tatcaatactacgttttggacgagccgcaggttaccgatgcggagtacgatcgcctgatg
gcgcagcttaagcagctggaggccgaacacccggcgctggtgacggcggattcgccgagc
cagcgcgtcggcggcgcgccgctggcggcctttggccaggtgcaccacgaggtgccgatg
ctctcgttggataacgtatttgatgaggaaagctatcaggcatttgacaagcgcctgcat
gagcggctgaaaagcggcgagccgctgaccttttgctgtgagccaaagctggacgggctg
gcggtcagcctgctgtatgagcaggggatgctggtccgggcggcgacccgtggcgatggc
agcaccggtgaagatatcaccgccaacgtgaaaaccatccgcgccattccgctgcgtctg
cagggggaggcgatccccacgcgcatcgaggtacgcggcgaggtcttcatgccgcaggat
ggcttcgaggcgatgaacgaagaggcgcgccggcgcggcgcgaagatttttgccaatccg
cgcaacgccgccgccggatcgctgcgacagctcgatccgcgcatcaccgcgcagcgcccg
ctgaccttctactgctacggctcaggcctgctggagggggggacgctgccggacagccac
tatcagtgtctgcagcgctttaagtcctggggactgccggtcagcgagcgggtaaagctg
tgctgcggcagcgcggaggtcttggcctactatcggcagaccgagcaggataggccaggc
ttaggctttgatatcgacggcgtggtgatcaaggtggacgatatcgccatccaggagcgg
ctgggctttgtcgcccgcgcgccgcgctgggcgacggcgtttaagtttccggcacaggag
cagatgacgcggctaaacggggttgagtttcaggtcggccgcaccggtgccatcacgccg
gtcgcgcgtctggagccggtgcaggtggccggggtgaccgtcagcaacgcgacgctgcac
aacgcggatgagatcgagcgcctggatctgcggatcggcgatacggtgatcgtacgccgc
gccggcgacgtgatcccgcaggtggtgggggtggtggaggccatgcgtccgcgcgatgcc
cttgagatcggctttccgacccactgtccggtatgcggctctgaggtggagcggacggag
ggcgaggcggtggcacgctgcagcggcggcctgatctgcgccgcgcagcgcaaggagtcg
ctgaagcattttgtgtcgcgccgcgcgatggatgtcgaggggatgggcgataaggtcatc
gagcagctggtggataaagagtatgtcgctacgcccgccgatctgtatcgtctgagcgcc
ggtaagctgaccggcctggagcggatggggcccaagtcggctaccaagcttatcgccgcc
ctcgagcgctcacgggaaaccacgctggcccgttttctctttgcgctgggcatccgcgag
gtgggggaggcgacggcggccaatttggccagccactttggctctctacaggcgctgcgg
gcggcggatctggagagcctcaagcgcgttcccgaggtgggcgaagtggtcgccagccac
atcgtccactttttgagtgaggcgcataatcgccaggtgatcgatgagctgatctccgac
gaggtcggcattcgctggccagagggcgcaccggcgcagtcggcgccggcgatcgacagc
ccgtttgccggtaagaccgtggtattgaccggctcactgagcgtactgtcgcgcgatgag
gcgaaggaccgactgacggcgctgggcgcgaaggtcagcggcagcgtatcgaagaagacc
gatctggtgatcgccggcgaggcggcgggttccaagctggcgaaggccaatgcgttgggc
atcgaggtaatcgatgaggcgcagatgctgcgtatgctgggggcatag
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integrated database retrieval system
