Edwardsiella tarda: ETAF_1062
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Entry
ETAF_1062 CDS
T02091
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
etd
Edwardsiella tarda
Pathway
etd03030
DNA replication
etd03410
Base excision repair
etd03420
Nucleotide excision repair
etd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
etd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ETAF_1062
03410 Base excision repair
ETAF_1062
03420 Nucleotide excision repair
ETAF_1062
03430 Mismatch repair
ETAF_1062
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
etd03032
]
ETAF_1062
03400 DNA repair and recombination proteins [BR:
etd03400
]
ETAF_1062
Enzymes [BR:
etd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ETAF_1062
DNA replication proteins [BR:
etd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ETAF_1062
DNA repair and recombination proteins [BR:
etd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ETAF_1062
NER (nucleotide excision repair)
GGR (global genome repair) factors
ETAF_1062
MMR (mismatch excision repair)
DNA ligase
ETAF_1062
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ETAF_1062
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
ADM41181
UniProt:
A0A0H3DRT9
LinkDB
All DBs
Position
1227540..1229567
Genome browser
AA seq
675 aa
AA seq
DB search
MTPTIEQQLEQLRDALRHHEYQYYVLDEPQVTDAEYDRLMAQLKQLEAEHPALVTADSPS
QRVGGAPLAAFGQVHHEVPMLSLDNVFDEESYQAFDKRLHERLKSGEPLTFCCEPKLDGL
AVSLLYEQGMLVRAATRGDGSTGEDITANVKTIRAIPLRLQGVAIPARIEVRGEVFMPQD
GFEAMNEEARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGSGLLEGGTLPDSH
YQCLQRFKSWGLPVSERVKLCCGSAEVLAYYRQTEQDRPGLGFDIDGVVIKVDDIAIQER
LGFVARAPRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVQVAGVTVSNATLH
NADEIERLDLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDALEIGFPTHCPVCGSEVERTE
GEAVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGDKVIEQLVDKEYVATPADLYRLSA
GKLTGLERMGPKSATKLIAALERSRETTLARFLFALGIREVGEATAANLASHFGSLQALR
AADLESLKRVPEVGEVVASHIVHFLSEAHNRQVIDELISDEVGIRWPEGAPAQSAPAIDS
PFAGKTVVLTGSLSVLSRDEAKDRLTALGAKVSGSVSKKTDLVIAGEAAGSKLAKANALG
IEVIDEAQMLRMLGA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgactcccacgattgaacaacaactcgaacagctgcgtgacgcgctgcgccatcatgag
tatcaatactacgttttggacgagccgcaggttaccgatgcggagtacgatcgcctgatg
gcgcagcttaagcagctggaggccgaacacccggcgctggtgacggcggactcgccgagc
cagcgcgtcggcggcgcgccgctggcggcctttggccaggtgcaccacgaggtgccgatg
ctctcgttggataacgtatttgatgaggaaagctatcaggcatttgacaagcgcctgcat
gagcggctgaaaagcggcgagccgctgaccttttgctgtgagccaaagctggacgggctg
gcggtcagcctgctgtatgagcaggggatgctggtccgggcggcgacccgtggcgatggc
agcaccggtgaagatatcaccgccaacgtgaaaaccatccgcgccattccgctgcgtctg
cagggggtggcgatccccgcgcgcatcgaggtgcgcggcgaggtcttcatgccgcaggat
ggcttcgaggcgatgaacgaagaggcgcgccggcgcggcgcgaagatttttgccaatccg
cgcaacgccgccgccggatcgctgcgacagctcgatccgcgcatcaccgcgcagcgcccg
ctgaccttctactgctacggctcaggcctgctggagggggggacgctgccggacagccac
tatcagtgtctgcagcgctttaagtcctggggactgccggtcagcgagcgggtaaagctg
tgctgcggcagcgcggaggtcttggcctactatcgccagaccgagcaggataggccaggc
ttaggctttgatatcgacggcgtggtgatcaaggtggacgatatcgccatccaggagcgg
ctgggctttgtcgcccgcgcgccgcgctgggcgacggcgtttaagtttccggcacaggag
cagatgacgcggttaaacggggttgagtttcaggtcggccgcaccggtgccatcacgccg
gtcgcgcgtctggagccggtgcaggtggccggggtgaccgtcagcaacgcgacgctgcac
aacgcggatgagatcgagcgcctggatctgcggatcggcgatacggtgatcgtacgccgc
gccggcgacgtgatcccgcaggtggtgggggtggtggaggccatgcgtccgcgcgatgcc
cttgagatcggctttccgacccactgtccggtatgcggctctgaggtggagcggacggag
ggcgaggcggtggcacgctgcagcggcggcctgatctgcgccgcgcagcgcaaggagtcg
ctgaagcattttgtgtcgcgccgcgcgatggatgtcgaggggatgggcgataaggtcatc
gagcagctggtggataaagagtatgtcgctacgcccgccgatctgtatcgtctgagcgcc
ggtaagctgaccggcctggagcggatggggcccaagtcggctaccaagcttatcgccgcc
ctcgagcgctcacgggaaaccacgctggcccgttttctctttgcgctgggcatccgcgag
gtgggggaggcgacggcggccaatctggccagccactttggctctctacaggcgctgcgg
gcggcggatctggagagcctcaagcgcgttcccgaggtgggcgaagtggtcgctagccac
atcgtccactttttgagtgaggcgcataatcgccaggtgatcgatgagctgatctccgac
gaggtcggcattcgctggcctgagggcgcaccggcgcagtcggcgccggcgatcgacagc
ccgtttgccggtaagaccgtggtattgaccggctcactgagcgtactgtcgcgcgatgag
gcgaaggaccgactgacggcgctgggcgcgaaggtcagcggcagcgtatcgaagaagacc
gatctggtgatcgccggcgaggcggcgggttccaagctggcgaaggccaatgcgttgggc
atcgaggtaatcgatgaggcgcagatgctgcgtatgctgggggcatag
DBGET
integrated database retrieval system
