Edwardsiella anguillarum: ETEE_3087
Help
Entry
ETEE_3087 CDS
T03245
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ete
Edwardsiella anguillarum
Pathway
ete03030
DNA replication
ete03410
Base excision repair
ete03420
Nucleotide excision repair
ete03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ete00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ETEE_3087 (ligA)
03410 Base excision repair
ETEE_3087 (ligA)
03420 Nucleotide excision repair
ETEE_3087 (ligA)
03430 Mismatch repair
ETEE_3087 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ete03032
]
ETEE_3087 (ligA)
03400 DNA repair and recombination proteins [BR:
ete03400
]
ETEE_3087 (ligA)
Enzymes [BR:
ete01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ETEE_3087 (ligA)
DNA replication proteins [BR:
ete03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ETEE_3087 (ligA)
DNA repair and recombination proteins [BR:
ete03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ETEE_3087 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ETEE_3087 (ligA)
MMR (mismatch excision repair)
DNA ligase
ETEE_3087 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ETEE_3087 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AIJ09516
UniProt:
A0A076LNT2
LinkDB
All DBs
Position
3106416..3108443
Genome browser
AA seq
675 aa
AA seq
DB search
MTPTIEQQLEQLRDALRHHEYQYYVLDDPQVTDAEYDRLMAQLKQLEAEHPALVTADSPS
QRVGGAPLAAFGQVRHEVPMLSLDNVFDEESYQAFDKRLHERLKSGEPLTFCCEPKLDGL
AVSLLYEQGVLVRAATRGDGSTGEDITANVKTIRAIPLRLQGEGIPARIEVRGEVFMPQD
GFEAMNEEARRRGAKIFANPRNAAAGSLRQLDPRITAQRPLTFYCYGSGLLEGGALPDSH
YQCLQRFKSWGLPVSERVRLCCGSAEVLAYYRQTEQERPGLGFDIDGVVIKVDDLAIQER
LGFVARAPRWATAFKFPAQEQMTRLNGVEFQVGRTGAITPVARLEPVQVAGVTVSNATLH
NADEIERLDLRIGDTVIVRRAGDVIPQVVGVVEAMRPRDAQEIGFPTHCPVCGSEVERTA
GEAVARCSGGLICAAQRKESLKHFVSRRAMDVEGMGDKVIEQLVDKEYVATPADLYRLSA
GKLTGLERMGPKSATKLIAALDRSRETTLARFLFALGIREVGEATAANLASHFGSLQALR
AADLESLKQVPEVGEVVASHVVHFLSEAHNRQVIDELISDEVGIRWPEGAPAQAASAIDS
PFAGKTVVLTGSLSVLSRDEAKERLTALGARVSGSVSKKTDLVIAGDAAGSKLAKANALG
IEVIDEAQMLRMLGA
NT seq
2028 nt
NT seq
+upstream
nt +downstream
nt
atgactcccacgattgaacaacaactcgaacagctgcgtgacgcgctgcgccatcatgag
tatcaatactacgttttggacgatccgcaggttaccgatgcggagtacgatcgcctgatg
gcgcagcttaagcagctggaggccgaacacccggcgctggtgacggcggattcgccgagc
cagcgcgtcggcggcgcgccgctggcggcctttggtcaggtgcgccacgaggtgccgatg
ctctcgttggataacgtatttgatgaggaaagctatcaggcgtttgacaagcgcctgcat
gagcggctgaaaagcggcgagccgctgaccttttgctgtgagccaaagctggacgggctg
gcggtcagcctgctgtatgagcagggggtgctggtccgggcggcgacgcgcggcgatggc
agcaccggcgaagatatcaccgccaacgtgaaaactatccgagccattccgctgcgcctg
cagggagaggggatccccgcgcgcatcgaggttcgcggcgaggtcttcatgccgcaggat
ggctttgaggcgatgaatgaggaggcgcgccggcgcggtgcgaagatttttgccaatccg
cgcaacgccgccgccggatcgctgcgccagctcgatccgcgcattaccgcgcagcgtccg
ctgaccttctactgctacggctctggcctgctggagggcggggcgctgccggacagtcac
tatcagtgcctgcagcgctttaagtcctggggactgccggtcagcgagcgggtgaggctg
tgctgcggcagcgcggaggtcttggcctactatcgccagaccgagcaggagaggcccggc
ttaggctttgatatcgacggcgtggtgatcaaggtggacgatctcgccatccaggagcgg
ctgggctttgtcgcccgcgcgccgcgctgggcgacggcgtttaagtttccggcgcaggag
cagatgacgcggctaaacggggtggagtttcaggttggtcgcaccggtgccatcacgccg
gtcgcgcgtctggagccggtgcaggtggccggagtgaccgtcagcaacgcgacgctgcac
aacgcggatgagattgagcgtctggatctacggatcggcgatacggtgatcgtacgccgc
gctggcgacgtgatcccgcaggtggtgggggtggtggaggcgatgcgtccgcgcgatgcc
caggagatcggctttccgacccactgtccggtatgtggctctgaggtggagcggacggcg
ggcgaggcggtggcacgctgcagcggtggcctgatctgcgccgcgcagcgcaaggagtcg
ctgaagcattttgtgtcgcgccgcgcgatggatgtcgaggggatgggcgataaggtcatc
gagcagctggtggataaagagtatgtcgcgacgcccgccgatctgtaccgcctgagcgct
ggtaagctgaccggcctggagcggatggggcccaagtcggccaccaagcttattgccgcc
ctcgatcgctcgcgggaaaccacgctggcccgttttctctttgcgctgggcatccgcgag
gtgggggaggcgacggcggccaatctggccagccactttggctccctacaggcgctgcgg
gcggcggatttggagagtctgaagcaggttcccgaggtgggcgaggtggtcgccagccac
gtcgtccactttttgagcgaggcgcataaccgtcaggtgatcgatgagctgatctccgac
gaggtcggcattcgctggcctgagggcgcgccggcgcaggcggcgtcggcgatcgacagc
ccgtttgccggtaagaccgtggtgttgaccggttcactgagcgtactgtcgcgcgatgag
gcgaaggagcgtctgacggcgttgggcgcccgcgtcagcggcagcgtatcgaagaagacc
gatctggtgatcgccggcgatgcggcgggctccaagctggcgaaggccaatgcgctgggc
atcgaggtgatcgatgaggcgcagatgctgcgtatgctgggggcatag
DBGET
integrated database retrieval system
