Echinops telfairi (small Madagascar hedgehog): 101649389
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Entry
101649389 CDS
T08707
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
etf
Echinops telfairi (small Madagascar hedgehog)
Brite
KEGG Orthology (KO) [BR:
etf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
etf03036
]
101649389 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
etf03400
]
101649389 (SMCHD1)
Chromosome and associated proteins [BR:
etf03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
101649389 (SMCHD1)
DNA repair and recombination proteins [BR:
etf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
101649389 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_5th
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_7th
Ig_SMCHD1_4th
Ig_SMCHD1_2nd
SMC_hinge
HATPase_c_3
HATPase_c
IFT20
Motif
Other DBs
NCBI-GeneID:
101649389
NCBI-ProteinID:
XP_004703117
UniProt:
A0ABM0IM04
LinkDB
All DBs
Position
Unknown
AA seq
2189 aa
AA seq
DB search
MGYKDYKGWQFETGIGEKFWPSAPVKGSGRDAARACGDITASSLTFAHTSLVLVARHCVH
RESGHEAGTGARARGGDTAHAKPECLTPPPAASKRLGSGGRDDVLWPQHVRLRAERDGQQ
QSPPGRKKGVSFPDTSAEAGSPHSAAEDAPAAQASGCPELPSGSARPRPRPPARPQRSPR
PLGDVVRASSFCDTAAGRRWSSGGSRCELAWAAAGLSSGGARRASSSPLERRAAETLYLF
DRREKESEPGERALQIGESADYSGFRARVCQTLGISPEEKFVITTTSRKEINCDNFDETV
KDGVTLYLLRSVNQLLLSATKERIDFLPHYDTLVKSGMYEYYASEGQNPLPFALAELIDN
SLSATSRNNGIRRIQIKLLFDEAQGKPAVAVIDNGRGMTSKQLNNWAVYRLSKFTRQGDF
ESDHSGYVRPVPVPRSLNSDISYFGVGGKQAVFFVGQSARMISKPADSHDVHELLLSKDD
FEKKEKNKEAIYSGYIRNRKPSDSVHITNDDERFLHHLILEEKEKDSFTAVIITGVQPEH
IQYLKNYFHLWTRQLAHIYHYYVHGPKGNEIHTSKEAGPFNNIDIEISVYEKGKAPKIVN
LREIQDDMQTLYINTAADSFEFKAHVEGDGVVEGIIRYHPFLYDRETYPDDPCFPSKLKD
EDDDDDGFIIEKAARGKRPIFECFWNGRLIPYTSVEDFDWCTPPKKRGLAPIECYNRISG
ALFTNDKFQVSTNKLTFMDLELKLKDKNTLFTRILNGQEQRMKIDREFALWLKDCHEKYD
KQIKFTVFKGITTRPDLPSKRQGPWATYAAIEWDGKIYKAGQLVKTIKTLPLFYGSIEKF
FLYGDHDGEVYATGGEVQLAMEPRAFYDEFKTVPIAKLDRTVAEKAVKKYVDDEMARLPD
RLSVTWPEGDELLPNEIRPAGAPIGALRIEILNKKGEAMQKLPGTSHGGSKKLLVELKVI
LHSSSGNKEIISHISQHGGKWPYWFKKMENIQKLGNYTLKLQVVLNESNADTYSGRALPS
KTIKFTVKEGKPEKFSFGLLDPPFRVGVPFNIPLEFQDEFGHTTQLVTDIQPILEARFFP
TTCTENFNLKVVLPSLKEDSQILKIRLLPGPPRQLKVKPDSEILVIENGTAFPFQVEILD
ESDNITAQPKLIVHCKFSGASNLPLYVVDCSSSGTSILTGPAIQVKNIKKDQTLKARIEI
PSCKGVAAVEKTIKLLPSSHVARLQIFSVEGQKAIQIKHQDEVNWIAGDIMHNLIFQMYD
EGEREINITPILAEKIKVNWTPDINKENLLQGLLPDVQVPTSVKDMRYCQVSFQDDHVSL
ESAFTVRPLPDEPKHLKCELKGGKTVQMGQELQGEIVAIVTDQYGNQIQAFSQSSLSTLG
IAGAGLDHSNLKMTFQENTQSISVRGIKFIPGPPGNKDLCFTWREFSDFIRVKLISGPPA
KLLLIDWPELKESIPVINGKELQNPLIVQLCDQWDNPAPTPQVKISLIKASTLKLTPSNQ
QHKTDEKGRANLGVFGVIAPRGEHSMQIKAIYNKNTIEGPIIKLMILPDPEKPIRLNIKY
DKDASFLAGNLFTDFMITVISEDDSIIKNINPARISMKMWKMSSSGNRPPANAETFSCNK
IKDNDKEDGCFYFRDKVIPNKVGTYYIQFGFTMDKANILNSEQIIVDVLPNQPVKLVPEI
QPATPAVSNVRSNNSRTLVKDLHLNITDEYCNHTGTDLVGTVVATIKGSSEEDTDIPLFI
GKVKMLEFPFVNGSAHITSLVLAENSPGKDSTEYFIIFEPRLPALSRTLEPYILPFMFYN
DVKKQQQMAALTKEKDQISKSILMYRSLFEASKQLLDEMKCQVEEAKLKEAQLRNELKTH
NIDIPTTQQMTHIDALLKNKLTEQEELTKKPRRSCTLPNYTKGSTDVLGKIAHLAQIEDD
RAAMVISWHLASDMDCVVTLTTDAARRIYDDTQGRQQVLPLDSIYKKTLPDWKRPLPHLR
NGKLYFKPTGDPIFARDLLTFPDNVEHCETVFGMLLGDTIILDNLDAANHYRKEVVKIAH
CPTLLTRDGDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPVPKQCLVLGEQIDLLQQYRSA
VHKLGSVNQDLNGQLEYLHTPDMKKKKQELCEQEKNLKLIEQKLGMTPTRKSNDSVRLHT
KDVAECPVPAKRMRRETTRQNRIITKTDV
NT seq
6570 nt
NT seq
+upstream
nt +downstream
nt
atgggttacaaggattataaaggctggcagttcgaaaccggtatcggagaaaagttctgg
ccatctgctccggtgaagggcagtgggagggacgcggcgagggcttgcggcgacattaca
gcctcgagtctgacgtttgcgcacaccagccttgttttggtggcccgtcattgcgtccac
agggaatcaggtcacgaagcagggacgggcgcacgtgctcgcggtggggacacggcccac
gcgaagcccgagtgcctgacgcctcctcccgccgcgtccaagcgactgggcagcggtgga
cgtgacgacgtgctctggcctcagcacgtgcggttgagagcagagagagacggacagcag
cagtctcctccgggccgaaagaaaggcgtctccttcccggacacctctgcggaggcgggc
tccccgcactccgcggccgaggacgccccagcagcgcaggcgtccggctgcccggagctt
ccctccggctccgcgaggccccgcccccggccgcccgcgcgcccccagcgttcgccccgc
cccctcggcgacgtagtgcgtgcctcttccttttgcgacacagctgccggccggaggtgg
tccagcggcgggtcgcgttgcgagctcgcgtgggcagcggcgggcctcagctcgggagga
gcgcgccgcgcgtcctcgtcccctctggagcggcgggcagcggaaaccttgtatttgttt
gaccggcgcgagaaggagtcggagcccggggagcgggcgctgcagatcggggaaagcgcg
gactactccggtttccgcgcgcgcgtgtgtcagacacttggcatttcaccagaagagaag
tttgttattacaacaacaagtaggaaagaaattaattgtgataattttgatgaaactgtt
aaagatggagtcactctgtacttgctacggtcagtcaatcagttactactctcggctaca
aaagagcggattgactttctacctcactatgacacgctggttaaaagtggcatgtatgaa
tattatgcaagtgaaggacaaaatcctttgccatttgctcttgctgaattaattgacaat
tcattgtctgctacttctcgtaacaatggtataagaagaatacagatcaaattgcttttt
gatgaagcgcaaggaaaacctgccgttgcagtgatagataatggaagaggaatgacctct
aaacagcttaacaactgggctgtctataggttgtcaaaatttacaaggcaaggtgacttt
gaaagtgatcattcaggatatgttcgcccagtaccagtgccacgcagtttaaatagtgat
atatcctattttggtgtgggcggcaagcaggctgttttctttgttggacagtcagccaga
atgataagcaaacctgcagattcccatgatgtccatgaacttttgctctctaaagatgat
tttgagaagaaggagaaaaataaagaggcaatatacagtggatacattagaaacaggaag
ccatctgattctgttcacattacaaatgatgatgaaagatttctacatcatcttatttta
gaggagaaggaaaaagatagctttactgctgtgattatcacaggagtacaaccagaacac
atacagtacttgaaaaattatttccatctttggacacgacagttagcgcatatttatcat
tactatgttcacggcccaaaaggaaatgaaatacatacatcaaaagaagctggacctttt
aacaacattgatattgaaatctccgtgtacgaaaaggggaaggcacctaagattgtcaac
ctacgggaaatacaagatgacatgcagacgttgtatataaacacagcagctgatagtttt
gaattcaaggctcatgttgaaggagatggtgtagtggaagggattattcgatatcatcct
ttcttatatgacagagaaacataccccgatgacccatgctttccatcaaaattaaaagat
gaagatgatgacgatgacggttttataattgagaaagctgcaagagggaaaaggcctatt
tttgaatgtttttggaatggacgattaataccatatacatctgttgaagactttgattgg
tgcactcctccaaagaaaagagggcttgccccaattgaatgctacaatagaatatctggt
gcattattcaccaatgacaaatttcaggtcagcaccaataaactgactttcatggatctg
gagctaaaactgaaagataagaataccttatttacacggatcttaaatggacaggaacag
cggatgaaaattgacagagagtttgcattatggctgaaggattgtcatgaaaaatatgac
aaacagataaaatttacagtctttaaaggaataactactcgtcctgatctcccttctaaa
aggcagggcccctgggccacatacgcagcaatagaatgggacggaaaaatatacaaagca
ggacagctggttaagactattaaaaccctgcccctcttttatggaagcatagaaaaattt
ttcctctatggtgatcatgatggagaagtgtatgccacaggaggagaggttcaacttgca
atggaaccgcgtgcattttatgatgaattcaaaactgtgccaattgcaaaactggatagg
acagttgctgagaaagctgtaaagaaatacgtagatgatgaaatggccaggctcccagac
aggttgtctgtaacttggcctgaaggagatgaattattgccaaatgaaattaggcctgct
ggagcccctattggtgcattaagaattgaaatactgaataaaaaaggggaagcaatgcaa
aagcttccaggaacaagtcatggagggtcaaagaaacttctggttgagctcaaagttatt
ttacactcttcaagtggaaataaagaaataatttcacatattagtcaacatggaggaaaa
tggccttactggtttaaaaagatggaaaatattcagaaattggggaattatacattgaaa
ttacaagttgtgttgaacgaaagtaatgcagacacttactcaggaagagcactaccatct
aaaacaattaaatttactgttaaagagggtaagccagaaaaattttcatttggtcttttg
gatcctccttttcgtgttggagtcccattcaatattcctctggagtttcaggatgaattt
ggtcacactactcaactagtcactgatattcaaccaattcttgaagcaagattctttccc
accacctgtacagagaatttcaatctgaaggttgttctaccaagtttaaaagaagactca
cagatcttaaaaattagattattacctggtcccccacgtcaattgaaagtaaaaccagat
tctgaaattttagttatagaaaatggaacagctttcccatttcaggtggaaattttggat
gaatcagacaatataacagcacaaccaaaattgatagttcattgtaagttttcaggtgct
tcaaaccttccgctctacgtcgtggattgtagtagttctggaactagcattttaactggg
cctgcaattcaagttaagaatattaagaaagaccagacacttaaagcaagaattgaaata
cctagttgtaaaggtgtagctgctgtggaaaagactattaagttgcttcctagtagccat
gttgcaagactgcaaatattcagtgtggaaggacaaaaggcaatccagatcaaacatcag
gatgaagttaattggatagcaggcgatattatgcataatcttatttttcaaatgtatgat
gaaggagaaagagaaattaacataacaccaattttagcagaaaaaattaaagttaattgg
acgcctgatattaacaaagaaaatttgctccaaggtctacttcctgatgtacaagtacca
acatctgtaaaagacatgcgctattgccaggtttcattccaagatgatcatgtgtctttg
gaaagtgcctttacagtaagaccacttcctgatgaacctaaacatctaaaatgtgagtta
aaaggaggaaaaactgtacagatgggccaagagcttcaaggagaaatagttgcaatagta
acagatcagtatggaaatcagattcaagcattttcacaaagttctttatctactttggga
attgctggggctggattggatcattcaaatttgaaaatgacttttcaggaaaatacacaa
agtataagtgtaagaggcataaaatttattccaggtcctcctggaaataaggatctgtgt
tttacttggcgtgaattttctgacttcattcgagtgaagctaatttctggtcccccagct
aagcttctccttatagattggccagagttaaaggagtccattccagttataaatggaaaa
gaattacagaaccctctaattgttcaactgtgtgaccaatgggataacccggcaccaaca
ccacaggttaaaataagtcttataaaagctagcactttaaagctcactccttcaaaccaa
cagcataagacagatgaaaaaggcagggctaatttgggagtattcggtgtcattgctcct
aggggagaacatagtatgcagattaaagctatctataataagaataccattgaaggacct
ataattaagttaatgattcttccagaccctgaaaaacccattcgtctcaatattaagtat
gacaaagatgcctcctttttagcgggaaatcttttcactgattttatgattacggttatt
tctgaagatgacagtatcattaagaatattaatccagcacgtatttcaatgaaaatgtgg
aagatgtctagtagtgggaaccgaccaccagcaaatgcagaaacatttagttgtaataaa
ataaaggataatgacaaggaagatggctgtttctatttcagggataaagtaattcctaat
aaagtgggaacgtactatatccagtttggtttcacaatggataaagccaatattcttaac
agtgaacagattatagtcgatgttcttcctaatcaacctgtgaagctagttcctgaaatc
caaccagctacacctgctgtttctaatgttcgttccaataacagtagaaccttggtcaaa
gatttacatctcaatatcacggatgaatactgcaatcacactggaactgatttggttggc
acagtagtagcgactattaaaggttccagtgaagaagatactgatataccactctttatt
gggaaagttaaaatgcttgaatttccctttgtgaatggttcagctcatatcacgagcttg
gtgctggcagaaaacagtcctggaaaggatagcactgaatattttattatatttgagcct
cggctaccagctttatcaagaacactagaaccatatatcctaccctttatgttttacaat
gatgttaagaagcaacagcaaatggcagcacttacaaaagaaaaagaccaaatatctaag
tctattcttatgtatagaagtttatttgaagccagcaaacaacttcttgatgaaatgaaa
tgtcaagttgaagaagcaaaattaaaagaggctcagctgcgaaatgaactgaaaacacat
aatattgacattcctacaacacaacagatgacacatattgatgcacttttgaaaaacaag
ttaacagaacaggaggagctaacgaaaaaacctagaagatcatgtactcttccaaactat
accaaaggcagtacagatgttttgggaaagatagcacaccttgcacaaattgaagatgat
agagctgcgatggttatttcttggcatctggcaagtgacatggactgtgtggtcaccctg
actactgatgctgcacgtcgcatctatgatgatacccaaggtcgtcagcaggtgttgccc
cttgattctatttataagaagactcttcccgattggaaaaggcctctacctcatttacga
aatggaaaattatattttaaacccactggagatccaatttttgcccgagacttgttaaca
tttccagataatgtagaacattgtgaaacagtctttggtatgctgttaggagacaccatt
attttggataacttggatgctgccaatcattatagaaaagaggttgttaaaatcgcacat
tgtcctacactgctgaccagagatggagatcgaattcgaagtaatggaaagtttggaggt
ctacagaataaagctcctccaatggataaacttcgaggaatggtatttggagctccagta
ccaaaacagtgcctggtcttaggagaacaaatagatcttcttcaacaatatcgctcagct
gtgcacaagctggggagcgtgaatcaggacctcaatggacagttggagtaccttcatact
cctgatatgaagaagaaaaaacaagagctttgtgaacaagaaaaaaatctgaaactaata
gagcaaaaactaggtatgactccaacacgcaaaagtaatgactcagtgcgtcttcacaca
aaggatgtggcggagtgtcccgttcctgctaaaagaatgaggagagagaccacgagacaa
aacaggattataaccaaaacagatgtgtga
DBGET
integrated database retrieval system
