Empidonax traillii (willow flycatcher): 114056738 Help Entry 114056738         CDS       T05887                                  Symbol TRAF6 Name (RefSeq) TNF receptor-associated factor 6   KO K03175   TNF receptor-associated factor 6 [EC:2.3.2.27] Organism etl  Empidonax traillii (willow flycatcher) Pathway etl04010   MAPK signaling pathway etl04120   Ubiquitin mediated proteolysis etl04140   Autophagy - animal etl04144   Endocytosis etl04620   Toll-like receptor signaling pathway etl04621   NOD-like receptor signaling pathway etl04622   RIG-I-like receptor signaling pathway etl05132   Salmonella infection etl05168   Herpes simplex virus 1 infection Brite KEGG Orthology (KO) [BR:etl00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    04120 Ubiquitin mediated proteolysis     114056738 (TRAF6)  09130 Environmental Information Processing   09132 Signal transduction    04010 MAPK signaling pathway     114056738 (TRAF6)  09140 Cellular Processes   09141 Transport and catabolism    04144 Endocytosis     114056738 (TRAF6)    04140 Autophagy - animal     114056738 (TRAF6)  09150 Organismal Systems   09151 Immune system    04620 Toll-like receptor signaling pathway     114056738 (TRAF6)    04621 NOD-like receptor signaling pathway     114056738 (TRAF6)    04622 RIG-I-like receptor signaling pathway     114056738 (TRAF6)  09160 Human Diseases   09172 Infectious disease: viral    05168 Herpes simplex virus 1 infection     114056738 (TRAF6)   09171 Infectious disease: bacterial    05132 Salmonella infection     114056738 (TRAF6)  09180 Brite Hierarchies   09182 Protein families: genetic information processing    04131 Membrane trafficking [BR:etl04131]     114056738 (TRAF6)    04121 Ubiquitin system [BR:etl04121]     114056738 (TRAF6) Enzymes [BR:etl01000]  2. Transferases   2.3  Acyltransferases    2.3.2  Aminoacyltransferases     2.3.2.27  RING-type E3 ubiquitin transferase      114056738 (TRAF6) Membrane trafficking [BR:etl04131]  Endocytosis   Clathrin-mediated endocytosis    Ubiquitin E3 ligases     114056738 (TRAF6) Ubiquitin system [BR:etl04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    TRAF proteins     114056738 (TRAF6) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  TRAF-mep_MATH MATH_2 zf-TRAF TRAF6_Z2 zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX zf-RING_2 zf-C3HC4_3 zf-C3HC4_4 zf-TRAF_2 zf-RING_5 Sina_ZnF SlyX Med21 RING_XB3-XBAT31 PspA_IM30 TRAF3_RING zf-RING_11 DUF16 DUF4455 HAP1_N CENP-F_leu_zip U-box CEP104_ZnF DM ATG16 zf-C2HC_3 Spc29 Myosin_tail_1 UPF0242 DUF1664 HMMR_N ADIP PUMA_CC Motif Other DBs NCBI-GeneID:  114056738 NCBI-ProteinID:  XP_027737982 LinkDB All DBs Position Unknown AA seq 545 aa AA seqDB search MSLLHSDSSCGARDVESGCCAAMASACSAGAKDDGTSVSSGTGNPPSSFTEETQGYDVEF DPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQLFPD NFAKREILSLMVKCPNKGCTMKMELRHLEEHQLQCEFSTVECPQCQGTFQKNRLKEHVTQ ECPRRQVCCPNCATSMAYEDKELHDQTCPLANVFCEYCNTVLIREQMPNHYNNDCPTAPV PCFYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQSFQNISVTATNPVPFINGLPFEPAL FSHVSHATYDCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQNTHMAELKRTIRSL EGKITEMEAQQCNGIYIWKIENFSGLQKAQEEERPVVMHSPGFYTGKPGYKLCLRLHIQL PNAQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGPERQNHEEVMEAKPELL AFQRPTVHRNPKGFGYVTFMHLQNLKQRTFIKDDTLLVRCEVLTRLDLNSVRREGFQARS TDGPM NT seq 1638 nt NT seq  +upstreamnt  +downstreamnt atgagcttgctacacagtgatagcagttgtggagcccgagacgtggaaagcggctgctgt gcagccatggccagtgcctgcagtgctggagccaaagacgacggcacaagtgtcagcagt gggactggaaacccgccaagctctttcacggaagaaacacaaggatatgatgtggagttt gatccgcccttggaaagtaaatatgaatgtccaatctgtttgatggctcttcgggaagcc gtgcagacaccatgtggacaccgattctgcaaaggctgcattgtcaaatcaataagagat gcaggtcacaaatgtccagtagacaacgaaattctgcttgaaaatcaactttttcctgac aactttgctaaacgggaaatcctttcattaatggtgaagtgtcccaacaagggctgcact atgaagatggagctgaggcacctagaggaacaccagttacagtgtgaattttccactgtg gaatgcccacagtgccaaggaaccttccagaagaaccgcctgaaagagcacgtgactcag gagtgtccaaggcgtcaagtgtgttgtccaaactgtgctacgtctatggcttatgaagat aaagagcttcatgaccagacctgcccacttgccaatgtattttgtgaatattgcaacaca gtgctaatcagagagcagatgcctaaccattacaacaatgactgtcctactgccccagtg ccatgtttttacagtgcctttggatgtcctgaaaagatgcaaaggaatgaactggcacga cacatgcaggagttcactcaggttcacatgagaatgatggctcagagttttcaaaatatc agtgtcactgctacaaatcctgtacccttcatcaatggcctaccctttgagcctgccctc ttctcacacgtgtcacatgccacatatgattgtaatccagaagttgaaaacttcaaagaa actattcagcaattggaaggtcgtctggtaagacaagatcaccaaatcagggaactcatt gctaaaatggagacccagaacactcacatggcagaactcaaacgtactatccgaagtttg gagggaaagatcactgaaatggaggcccagcaatgtaatggtatttatatctggaagatt gagaacttcagtggacttcagaaagcccaggaagaagagagacctgttgtgatgcacagt cctggcttctatactggaaagcctgggtacaagctgtgtttgcgcctgcatatccaatta ccgaatgctcagcgctgtgctaattttatatctctgtttgtccacactatgcaaggagaa tatgacagccatctgccatggcctttccagggcacgatacgactttctattttggatcaa tcagaaggcccggaaaggcagaatcatgaagaagtaatggaagccaagccagagttactg gccttccagaggccgacagttcaccgcaatccaaaaggttttggttatgtgactttcatg cacctgcaaaatttgaaacaaagaaccttcataaaggacgatacacttctggtgcgctgt gaagttctaacgcgtttagatttgaacagtgtccgcagagaaggatttcaggctcgcagt actgatggacctatgtag

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