Empidonax traillii (willow flycatcher): 114058733
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Entry
114058733 CDS
T05887
Symbol
SMCHD1
Name
(RefSeq) structural maintenance of chromosomes flexible hinge domain-containing protein 1
KO
K23113
structural maintenance of chromosomes flexible hinge domain-containing protein 1
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
etl03036
]
114058733 (SMCHD1)
03400 DNA repair and recombination proteins [BR:
etl03400
]
114058733 (SMCHD1)
Chromosome and associated proteins [BR:
etl03036
]
Eukaryotic type
Heterochromatin formation proteins
Other heterochromatin formation proteins
114058733 (SMCHD1)
DNA repair and recombination proteins [BR:
etl03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Other NHEJ factors
114058733 (SMCHD1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMCHD1_S5
Ig_SMCHD1_1st
Ig_SMCHD1_8th
Ig_SMCHD1_6th
Ig_SMCHD1_5th
Ig_SMCHD1_2nd
Ig_SMCHD1_7th
Ig_SMCHD1_4th
SMC_hinge
HATPase_c_3
HATPase_c
Motif
Other DBs
NCBI-GeneID:
114058733
NCBI-ProteinID:
XP_027742135
LinkDB
All DBs
Position
Unknown
AA seq
2031 aa
AA seq
DB search
MAAAAGGGRAPRRPALLAPRGNGDRTVFLFDRRREQADPDEKVLSYGKDSYRAFRSAVCQ
AFGIATDENFVITTTNRKEITEDNFSELVQDGVTLYLLQSVDQMLLLATKERIDFLPHYD
TLVKSGMYEYYASEGQNPLPFALAELIDNSLSATSRNTGIRSIQIKLLFDDSQGKPAVAV
IDNGSGMTSKQLNNWAVYRLSKFTRQGDFESDHSGYVRPLPVPRSLNSDISYFGVGGKQA
VFFVGQSARMISKPAESQDVHELVLSKEDFEKKEKHKEAIYSGFIRNRKPSDSTHITSDD
ERFLHNLILEERDKESFTAVVITGVQPDHMQYLKNYFHLWTRQLAHIYHYYIHGPKGNET
NAVTKDISPFNNIDIQISMFEKGKVPKVVNLREIKDDMQTLYINTAADSFEFKAHVEEEG
IVEGIIRYHPFLYDKETYPDDPCYPSRLNDDDDDDCFIVEKGARGKRPIFECFWNGRLIP
YTTVEDFDWCAPPKKRGLAPVECYYRISGALFTNDKFQVSTNKLTFMDLELKLKDKNTLF
TRIFNGQEQRMKIDREFALWLKDCHEKYDKQIKFTVFKGITVRTDVPSKRLQSPWTMYAA
IEWDGKTYKTGQLVKSIKTHPIFYGSIEKFFLYGDHDGDIFATGGEVQIALEPQALYAEM
RIIPISKLDRTVSEKVVKKYIEDEMARLPDRLSVTWPEGDELLPNETRFAGTPIGALRIE
ILNKKGEAMQKLPGTSHGGSKKLLVELKVILHSPTENKEIISHISQHGGKWPYWFKKMEN
LQKLGNYSLKLQVVLNESNADTYAGRPLPSKVFKFTIIEGKPDKFLVGLLELPFRIGVPF
SIPLELQDEFGHATHLTSRMRPILEASGLTLKHDDIPVGTKCVIKNVTAKGCINSCQGKN
FNLKITLPGLKEDTQIIKIRLQPGPPRQLKVKPDSEILKIENGTAFPFQVEVLDESGNIT
AQPELIVHCKFLGASDLPVYSVDCSNGGTNILTGPVIHVQNIKKDQMLKARIEILNCKDV
PPVEKIIKLLPSSHVARLQVLSMNGQKALQIKHQDEINCVAGHSMNKLIFQMYDEAEREI
PITAAAAEKIKVNWTPKIDRELLMQGLLPDVKVPSSVKDVRYCLITYLDEHVSLESAFTV
RPLPDDPKHIKCRLKGSNTLRMGEELQSEIDVMITDQFGNQVQTVTSACVNSLGVSGPGL
DKSNLKITWQESTQTMKVKGIRYKPCLLGSKELCFAWREFSDFIRVNLIAGLPAKLQFVD
WPELEKPVAVINGRELDRPLIVQLCDQWGNPSPEPNVKISLTKSNNLKIVSSNQQHKTDD
TGRANLGVFTIHAPRGEHILQLRALYNKTTLDCPIITINVLPDPEKPVCLNVKYDRSPAF
PAGGTFPDFMVSVLSEDDTIIKNINPARISMKMWEAQSSRIRSPIDITTFSCSKVKDEKE
DGFFYFRDKVVPERVGTYSIQFTFAMDKTNMLNSEQIIFEVVPNDPVRLLPDSLPATPAV
SNVRALTSRTLVKDLYLHIMDEYNNHTGLDLVGRIIAKIKSPNEEDIEIPQFHGKVSTVE
FPFEHGSAEINLVLAEDSPGRDSTEYILVFEPHLPALKKPLEPYHLSFMFYNDSKKQQLM
ATLTREKDQLSKSIDLYRKMFDTTNQLVTEMKCQVKEAETRETVLKNELKKHQIELPQTN
ILQYVDSLLKKKMLDQEGVMKQPRRTCTLPNYPKGNPDVLGKIAHLAQIEDNEAAKVISW
HLASDMDCVVTLTTEAARSIFDETQGRQQVLPLDSIYKKTLPDWSRPLPHLRNGKTFFKP
VGNPVFARDLLTFPDNIEHCQTVFGMLLGDTIIIDNLDAANHYRKEVVKITHCPTLLTRE
GDRIRSNGKFGGLQNKAPPMDKLRGMVFGAPMPKLYSTFSGQIDLLQQYRAAVVKLDNVN
KDLDLHLQSLNTPEMQKKKQELAEQEKSLKLVKQKLGMTPALSDKGAESLLQPIILDMSD
TPIPPKRMRRETMKRLYSSEEWISSSTKQQQHQVLQIPPSELNGTPRKRKA
NT seq
6096 nt
NT seq
+upstream
nt +downstream
nt
atggcagcggcggcgggaggcggccgcgctcctcgcaggccggcgctgctggccccccgc
ggcaacggagaccgcaccgtgttcctcttcgaccggcgccgggagcaggcggacccggac
gagaaagtgctcagctacggcaaggacagctaccgcgccttccgcagcgccgtgtgccag
gcatttggcatagctactgatgaaaactttgttatcaccacaacaaataggaaggaaatt
acagaagacaacttcagcgaacttgttcaggatggagttactttatatctgctgcagtca
gttgatcaaatgttgcttttggcaaccaaggaacgaatcgacttccttcctcactatgat
acacttgtcaaaagtggcatgtacgagtactatgccagcgaagggcaaaatcctttgcct
tttgcccttgctgagttgattgacaattctctgtcagctacatcccgaaataccggtatt
cggagcatacagataaaactgttatttgatgattcccaaggaaaaccagctgttgctgtg
atcgataatggaagtggaatgacttctaaacagcttaataactgggctgtatatagattg
tcaaagtttacaagacaaggtgactttgaaagtgatcattcaggatacgtacgtcctttg
ccagtgcctcgtagtttaaacagtgatatctcttattttggagttggaggcaaacaagca
gtgttcttcgttggacagtctgccagaatgataagcaaacctgcagaatctcaggatgtt
catgaacttgtcctttctaaagaggattttgagaagaaggagaaacacaaagaagcaata
tatagtggtttcattcgaaacagaaagccatctgactctactcacatcacaagtgatgat
gaaagatttcttcataatctaatattagaagaaagggataaagagagtttcacagcagtt
gtcattacaggtgtacaaccagatcacatgcagtacttgaaaaactactttcatctttgg
acaaggcagctggcacatatctatcactattatatccatggaccaaaaggaaatgaaact
aatgctgtaacaaaagacataagccctttcaacaacatcgatattcagatttcaatgttt
gaaaaaggaaaagtaccaaaggtcgtcaatctgagggagatcaaagatgacatgcagaca
ttgtatataaatactgcagctgatagttttgagtttaaggcacacgttgaagaagaaggt
atagtggaaggcatcatccgatatcatcccttcctgtatgataaagaaacataccctgat
gatccatgttatccatcaagattaaacgatgatgatgatgatgactgctttatagtagaa
aaaggtgccagaggaaaaaggcctatttttgaatgtttttggaatggtagattgatacca
tacacaactgtggaagattttgactggtgtgctcctccaaagaagagaggattggcacca
gttgaatgctactacagaatttctggtgcattgtttaccaatgataagttccaggtcagc
acaaacaaactcactttcatggatctggagctgaagctaaaagataagaatactctgttc
acgagaatcttcaacggacaggagcagcgaatgaaaattgacagagaatttgctttgtgg
ctcaaagactgtcatgaaaaatatgacaaacagataaaattcacggtctttaaaggaata
actgtacgtactgatgtaccatccaaaagattacagagcccttggacaatgtatgctgca
atagagtgggatggaaaaacatacaaaactggacagctggtgaaaagtattaagactcat
ccaatattctatggaagtattgagaaattttttttgtatggagaccatgatggggatata
tttgccactggaggagaggttcaaattgctttggaaccccaggcgttgtatgctgaaatg
agaattattccaatctcaaaacttgacagaacagtgtctgagaaagttgttaaaaaatac
atagaggatgaaatggcaagacttcctgacagattatcggtaacatggcctgaaggagat
gagttattaccaaatgaaacaagatttgctggtacaccgataggagcgttaagaatagaa
attttaaataaaaaaggagaagcaatgcaaaaacttccaggtacaagccatggaggttca
aagaaacttcttgttgaactcaaggttatcttacattcacctactgagaataaagaaata
atttcccatatcagtcagcatggaggcaaatggccatactggtttaaaaaaatggaaaat
cttcagaaacttgggaactactccttgaaactgcaagttgtattgaatgaaagtaatgca
gacacttatgcaggaaggcctctaccatctaaagtatttaaatttactattatagagggc
aaaccagataaatttttggtcggtcttctggagcttccttttcgaattggagtacctttt
agtattcctttggaactgcaagatgaatttggtcatgcaacgcacttgacatctcgcatg
agaccaattcttgaagctagtggattaacattgaagcatgatgacatacctgtgggaaca
aagtgtgtcattaagaatgtcactgctaaaggctgtatcaatagttgccagggcaagaac
tttaatctgaagattactcttcctggtttgaaagaagacacacaaatcattaaaataaga
ttgcagcctggccctcctcgtcagttgaaagtgaaaccagattcagaaattctcaagatt
gaaaatggtacagcttttccctttcaggttgaagtactggatgaatcaggaaatataaca
gcacagccagagttgattgttcattgtaagtttttaggtgcttcagaccttcctgtgtat
tctgtggactgcagtaatggaggaacaaacattttaactggtccagtaatacacgtacag
aatatcaagaaagaccagatgctgaaagcaagaattgaaatacttaattgtaaagatgtg
ccaccagtggaaaagattattaaacttcttcctagcagtcatgttgcaagactgcaggtt
ttaagtatgaacggacaaaaagctcttcaaattaaacatcaggatgaaattaattgcgtt
gctggccatagtatgaacaagcttatatttcagatgtatgatgaagcagaaagggagata
cccataactgcagctgctgcagaaaagatcaaggttaactggacacctaaaattgacaga
gaactgttgatgcagggattattacctgatgtaaaagtaccgagctcagtaaaagatgta
cgttactgtctaattacttatcttgatgaacatgtgtctttggagagcgcattcacagtc
agaccacttcctgatgatcccaaacacattaaatgtagactaaaaggatcaaacacactg
cggatgggtgaagaactacaaagtgaaattgatgtaatgattacagatcagtttggaaat
caggttcagacagtgacatctgcatgtgtaaattccctaggagtttctgggcctggactt
gataaatcaaatttgaaaataacttggcaggaaagtactcaaacaatgaaagtaaaaggt
attcggtacaaaccctgtttacttggaagcaaagaattgtgctttgcttggcgtgaattt
tctgactttatcagggtgaatttaatagcaggattgcctgctaaattgcagtttgtggat
tggccagagttagaaaagcctgttgcagtgattaatggtagagaattggacaggcccctt
attgttcagttgtgtgatcagtggggaaatccatctcctgaacctaatgtcaaaatcagc
cttacaaagagtaacaacttaaagattgtttcttcaaaccagcaacataaaacagatgac
actggtagggctaacctgggagtttttactattcatgcacctaggggagagcacatttta
cagcttagagccttatacaacaagaccacattagattgtcctataatcacgataaatgta
ctgcctgatcccgagaaacctgtttgcttgaatgttaaatatgacagaagtcctgctttt
ccagcaggaggtaccttccctgattttatggttagtgttctttctgaagatgacaccatt
attaaaaatattaatccagcacggatttctatgaaaatgtgggaagcacagagcagccgg
attaggtcgccaattgatattacaacatttagctgtagtaaagtaaaggatgaaaaggaa
gatggcttcttctacttcagggataaagtggttccagagagagtgggcacttacagtatc
cagtttacctttgctatggataagacaaatatgctcaacagtgaacagattatatttgaa
gttgtacctaatgaccctgtgcgcttgcttcctgattctttaccagctactccagcagtt
tccaatgttcgagctcttacgagccgtacactggtcaaggatttatacctccatataatg
gatgaatacaacaaccacactggacttgatctagttggcagaataatagcaaaaattaaa
agccctaatgaagaagatatagagatcccacagtttcatgggaaagtcagtacagtggag
tttccatttgagcatggatcagctgaaattaatctagtgctggctgaagacagtcctgga
agagatagcactgaatatattcttgtctttgagccacatttgccagctctgaaaaaacct
ttggaaccgtatcatctctcatttatgttttacaatgattccaagaagcagcagctgatg
gcaacacttacaagggagaaagatcaattatctaagtccatagatctttacagaaagatg
tttgatactactaaccagcttgtaactgaaatgaaatgtcaggttaaagaagctgaaaca
agagaaactgtcctaaagaacgaactgaaaaagcaccaaattgaattaccacagacaaac
atacttcagtatgtggattcacttctgaaaaaaaagatgttggatcaagaaggtgtaatg
aagcagccaaggagaacttgtactctcccaaactatccaaaaggcaacccggatgttcta
ggcaagattgcacatttagctcaaattgaggataacgaagcagcaaaagttatctcctgg
catttggcaagtgacatggactgtgtggtcacactgacgactgaagccgctcgttctatt
tttgatgaaactcaaggtcgacaacaagtgttaccccttgattctatttacaagaagaca
ctcccagactggagcagacctttacctcacttgagaaacggaaaaaccttcttcaaacct
gttggaaatcctgtatttgccagagatctgttaacatttccagataacatagagcattgt
caaacagtgtttggtatgctcttgggtgacaccatcattatagataacttggatgctgcc
aaccattacagaaaagaggttgtaaaaattacacattgccctaccttgctaacaagggag
ggagacaggattcgcagcaatggaaaatttggaggcctgcagaataaagctcctccaatg
gacaaactcagaggaatggtatttggagcaccaatgccaaaactttactctactttctct
ggacagatagatcttcttcagcaataccgtgcagcagtggtgaaacttgataatgtgaat
aaggaccttgatttacatttgcagtctctgaacactccagaaatgcaaaagaaaaaacag
gaacttgctgaacaagagaaaagcctcaagctagtaaaacagaaattgggtatgactcct
gctttatcagataaaggtgctgagtcgttacttcagcctataatattagatatgtctgac
actcccatacctcccaaaagaatgcgaagagaaacaatgaaaagattgtatagctcagaa
gaatggatctccagttccacaaagcagcagcaacatcaagtgctgcaaattcccccttca
gaacttaatggaacaccacgaaaaaggaaggcgtag
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integrated database retrieval system
