Empidonax traillii (willow flycatcher): 114060477
Help
Entry
114060477 CDS
T05887
Symbol
SMG6
Name
(RefSeq) telomerase-binding protein EST1A isoform X1
KO
K11124
protein SMG6 [EC:3.1.-.-]
Organism
etl
Empidonax traillii (willow flycatcher)
Pathway
etl03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
114060477 (SMG6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
etl03019
]
114060477 (SMG6)
03032 DNA replication proteins [BR:
etl03032
]
114060477 (SMG6)
Messenger RNA biogenesis [BR:
etl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
114060477 (SMG6)
mRNA cycle factors
Common to processing body (P body) and stress granule
114060477 (SMG6)
DNA replication proteins [BR:
etl03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
114060477 (SMG6)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
PIN_4
EST1
PIN_9
UPF0561
Motif
Other DBs
NCBI-GeneID:
114060477
NCBI-ProteinID:
XP_027745810
LinkDB
All DBs
Position
Unknown
AA seq
1391 aa
AA seq
DB search
MKEVKEPRHRKDNRRPDQEIYKPGLSRLRSKLVPLKQEASEKERSRAEEGKEESAGDSVG
AGAPAGEDFSRSDGPRQNGPSQEKEETETKGGLQSQESLSKQPTADEWCSKTPRRTKKPD
QQIYQPGKRLHSAAKEPSLRSAAEEAASKMEQLKLERDEESEKSAGKDNNRKIKPSKEDR
EGSQAGEGVKASRAEKGRRAERSDRTRRAGDEGLQGKLGSTKRYSRTDKRRSRYRTCSTS
SAGSSNSIDGALLVDGVERRQERARERIRPRKQLSVSSTDSLDDDRFDEAEAYVSSRNSD
RRKHLEQSRGSRSESEWSSNGREAKGPFRVTFDSRTMNRDVSLADTDKKKSLKASASCKD
SEALEPRSQSREPQGRGRGILFLPANTDLSASTTGAPESSHSGPRLLLGGAGSKGSRSRG
RGGTARRLWDPNNPDQKPALKSQTAQLHFLDTDDEVSPTSWGEARQAQSSYYKFQNSDNP
YYYPRASSQGPQYPYGGYSLQYPMGPTNGVYPGAYYPGYPGQAGQYLCGPLPPTPLSPEM
EQQMRNMQQQELSKLLREAGNQEQQLSNLLSRDRISPEGLEKMAQLRVEMLQLYERCILM
DIEFSDTQNVDQLLWKNAFYQVIEKFRQLLKDPQGVNAQEIRNKLLLLLDEGSSFFDGLL
QKLQVSYQFKLEDYMDGMAIRSKPLRKMVKYALISAQRCMICQGDICRYREQANDTANYG
KARSWYLKAQQIAPKNGRPYNQLALLAIYTRRKLDAVYYYMRSLAASNPILTAKESLMSL
FEETKRKSEQMEQRKHQVLDVSPSRRGKGKKSTLRQVGDDATRLEIWIHPSHSRSSQGHE
SGRDSEQDNGLGNLSPSDLNKRFILSFLHAHGKLFTRIGMETFPAVAEEVLREFQVLLQH
SPPPIGSTRMLQLVAINMFAVYNSQPKECISEDCRSVIQEQATALGLSMFALLVRRCTNL
LRECAPVQAQEMEQEDEEDDIKVSALPQDLKELLPSVKVWSDWMLGHPDTWNPPPTSLEL
PKQVSVDVWATLADFCNILTTVNQSEVPLYKDPDDDLALLSLEEDRLLSGFVPLLVAPQE
PCYVERTSDKVIAADCKRVTVLKYFLEALCGQEEPLLAFKGGKYVSVAPVPDAMGKEMGS
QEGKQLEDQKEDDVRIEAFEDDSETEGSGGEMDIKELRAKKQALARKVAEQQRRQDKIQA
VLKDQSQMRQMEVEIRPVFLVPDTNGFIDHLSSLVTLLDCRKFILVVPLIVINELDGLAK
GPEMEHRAAGYARQVQERARKSIEFLEERFESRDNCLRALTSRGNELESISFRSEDTTGQ
QGNNDDLILSCCLHYCNDKAKDFMPSNKDDPIRLLREVVLLTDDRNLRVKALTRNVPVRD
IPTFLKWAQEG
NT seq
4176 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaggtgaaggagccgaggcaccgcaaggacaacaggcgcccagaccaagagatt
tacaagcctggcctctccagattgaggagcaaactggtaccattaaagcaggaggcgtca
gagaaggagaggagcagagctgaggagggcaaggaggagagtgctggggactctgtggga
gcaggggctccagctggggaggatttcagcagaagcgatggccccaggcagaacggccct
tctcaggaaaaggaagagacagagaccaaaggtggcctgcagagccaggagagcttgtcc
aagcagcccactgcggatgagtggtgttccaagacccccaggagaaccaagaagccggac
cagcagatctaccagcctgggaagcgcctgcattcagctgccaaagagccgtccctgcgg
tcggcggctgaggaagctgccagcaagatggagcagctgaaactcgagagggatgaagag
agcgagaaaagtgctggaaaagacaataacaggaagattaaaccaagcaaggaggacaga
gaggggagccaggctggggaaggagtgaaagcctcaagggctgaaaaaggaagacgagca
gagcgaagcgacaggacgaggagagcaggtgacgaggggctgcagggcaaactgggctcc
accaagcggtattcccgcacggacaagcgccggagccggtaccgcacctgcagcacgagc
tcagctggaagcagcaacagcatagacggagccctgctcgtggatggggtggagaggcgg
caggagcgcgccagggaaagaatacgtcccaggaagcagctctctgtgtcctccactgac
tccttggacgatgacagattcgatgaggcagaagcgtacgtctccagcaggaattctgac
aggaggaagcacttggagcagagtcgaggttccaggagtgagagcgaatggagcagcaat
ggcagggaagcaaagggaccctttcgagtcacgtttgacagcaggaccatgaacagggat
gtcagcctggcagacacagataaaaaaaagtccctgaaggcatctgctagttgcaaagac
tcagaggctttggagccaaggagccagagcagggagccccaggggaggggccgtgggatt
ctcttcctgcctgccaacacggacctctctgccagcactacgggtgcccccgaatccagt
cactctgggcccaggctcctgctcggcggggctggcagcaaaggctcccggagccggggc
cgaggcggcaccgctcgcaggctgtgggacccaaacaacccggaccaaaaacccgccctg
aagagccagaccgcccagctccacttcctagacacggacgatgaagtgagccccacctcc
tggggggaagcccggcaggcccagtcctcctactataaattccagaactctgacaacccc
tactattaccctcgggcctccagccaaggcccccagtatccatatggcgggtattccctg
cagtatcccatgggtccaaccaacggcgtgtacccaggagcctattaccctgggtacccc
ggccaggcagggcaatacctgtgtggcccactcccccccactcctctgagccccgagatg
gagcagcagatgaggaacatgcagcagcaggagctcagcaaactcctgcgtgaggctggg
aaccaggagcagcagctcagcaacctcctttccagagaccgcatcagccccgaggggctg
gagaagatggcccagctgagggtggagatgctgcagctctatgagcggtgcatcctgatg
gatatcgagttctccgatacccagaacgtggaccagttgctgtggaagaatgcgttttac
caggtgatcgagaaattccggcagctcctcaaggaccctcagggggtaaatgcccaagaa
attcggaacaagctgctcctgcttctggatgagggctcttctttttttgatggcctcctc
caaaagctgcaggtgtcctaccagttcaagctagaggactacatggatgggatggccatc
cgcagtaagcctctccggaaaatggtgaagtacgcgctgatcagtgcccagaggtgcatg
atttgccaaggggacatttgccggtacagagaacaagcgaacgacacggccaactacggc
aaggcccgcagctggtacctgaaggctcagcaaatcgctcccaaaaacggccgcccgtac
aaccagctggcgcttctggcgatctacacgaggaggaagctggatgctgtctactattac
atgcgtagcttggctgccagcaaccccatcctcacagccaaggagagcctcatgagtctg
tttgaggagacaaaacgcaagtctgagcagatggagcagaggaaacaccaggtgctggac
gtgagccccagccgccgggggaagggcaagaagtccacactgcgacaagttggagacgat
gccacgcggctggagatctggatccatccctcccactcccgctcctcccagggccacgag
tctggcagggattctgagcaggacaacggtcttgggaacctcagccccagcgacctgaac
aaaaggttcatcctcagttttctccatgcccatgggaagctgtttaccaggattgggatg
gagactttccctgcggtggccgaggaggtcctgagggagttccaggtcctgctgcagcac
agcccccctcccatcggaagcacccgcatgctccagcttgtggcaatcaacatgtttgca
gtgtacaactcccagcccaaagagtgcatctctgaggactgtcgctccgtcatccaggaa
caggccacagctctggggctctccatgtttgcactcttggtgaggaggtgcaccaacctg
ctaagggaatgtgcgccagttcaggcacaagagatggagcaggaggatgaggaggatgac
atcaaggtctctgccttgccccaggacctgaaggagctgctccccagcgtgaaagtctgg
tcggactggatgcttggccacccggacacctggaatcctcctccgacctctctcgagctc
cccaaacaggtctcagtagatgtgtgggcgacgctggctgacttctgtaacatactgacc
acagtgaatcagtcggaggtgcccttgtacaaggacccagatgacgaccttgccctgctt
agcctggaagaggatcggctgctctcgggcttcgttcccctgctggtcgccccccaggag
ccctgctacgtggagaggacctcggacaaggttattgcagccgactgcaagagggtcaca
gttctgaagtatttcctggaagccctttgtggacaagaagagcctttgctggcattcaag
ggtggaaaatatgtgtcagtggcacccgtcccagacgccatgggaaaggaaatgggaagc
caagagggaaaacaactggaagatcagaaggaggatgatgtgaggattgaggcatttgaa
gatgattcggagactgaaggcagtggaggagagatggacatcaaggagctcagagccaag
aagcaagccctggccaggaaagttgctgagcagcagcgccgtcaagacaagattcaggcc
gtgctgaaagaccagagtcaaatgaggcagatggaggtggagatcagacctgttttcctg
gtcccagacaccaatggtttcattgaccacctcagcagcttggtcacactgctggactgc
aggaagttcatcctggtggtgcccctgattgtgataaacgagctggatggcctggccaag
ggcccagagatggagcaccgggctgcgggctatgcccgccaagtgcaggagagagccagg
aagtccatcgagttcctggaggagcgattcgagagcagggacaactgcctgagggctctg
accagccgaggcaacgagctggagtccatctccttccgcagtgaagacaccactggccag
cagggaaacaatgatgaccttattctgtcctgctgcctccactattgcaatgacaaggcc
aaggatttcatgccctccaacaaagacgatcccatccgtttgctcagggaagtggttttg
ctgacggacgacaggaacctgcgagtcaaagcgctgacccgcaacgtgccggtgcgggac
atccccacctttctcaagtgggcccaggaaggctga
DBGET
integrated database retrieval system
