KEGG   Empidonax traillii (willow flycatcher): 114063608
Entry
114063608         CDS       T05887                                 
Symbol
BRCA1
Name
(RefSeq) breast cancer type 1 susceptibility protein isoform X1
  KO
K10605  breast cancer type 1 susceptibility protein [EC:2.3.2.27]
Organism
etl  Empidonax traillii (willow flycatcher)
Pathway
etl03440  Homologous recombination
etl03460  Fanconi anemia pathway
etl04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:etl00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    114063608 (BRCA1)
  09124 Replication and repair
   03440 Homologous recombination
    114063608 (BRCA1)
   03460 Fanconi anemia pathway
    114063608 (BRCA1)
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:etl01009]
    114063608 (BRCA1)
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:etl04121]
    114063608 (BRCA1)
   03036 Chromosome and associated proteins [BR:etl03036]
    114063608 (BRCA1)
   03400 DNA repair and recombination proteins [BR:etl03400]
    114063608 (BRCA1)
Enzymes [BR:etl01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     114063608 (BRCA1)
Protein phosphatases and associated proteins [BR:etl01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     114063608 (BRCA1)
Ubiquitin system [BR:etl04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    114063608 (BRCA1)
  Multi subunit type E3
   BRCC complex
    114063608 (BRCA1)
Chromosome and associated proteins [BR:etl03036]
 Eukaryotic type
  Centrosome formation proteins
   Centrosome duplication proteins
    Regulators of centriole replication
     114063608 (BRCA1)
DNA repair and recombination proteins [BR:etl03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    BRCA1-core complex
     114063608 (BRCA1)
    BRCA1-A complex
     114063608 (BRCA1)
    BRCA1-B complex
     114063608 (BRCA1)
    BRCA1-C complex
     114063608 (BRCA1)
    BRCA complex
     114063608 (BRCA1)
   FA (Fanconi anemia) pathway
    Downstream FA components
     114063608 (BRCA1)
SSDB
Motif
Pfam: BRCT_assoc BRCT zf-C3HC4 zf-C3HC4_2 zf-C3HC4_4 BRCT_2 zf-RING_UBOX zf-RING_2 RING_XB3-XBAT31 BRCT_3 zf-Nse zf-C3HC4_3 zf-RING_5 zf-RING_6 RTT107_BRCT_5 zf-MIZ Zf_2nd_IFT121 zf-RING_10 TRAF3_RING zf-ANAPC11
Other DBs
NCBI-GeneID: 114063608
NCBI-ProteinID: XP_027751793
LinkDB
Position
Unknown
AA seq 1790 aa
MDSSVITVGHIQNVLSAMQKNLECPICLDVVQEPVSTKCDHIFCRFCMFKLLSKKKKGVV
QCPLCKAEVTKRSLKENSRFKQVIEGLLETIHAFELDTGVKFLKSHQIHKTSTETTATEF
LGKESSVVQSKGFRNRRKSAEENGQENLTSQETAVNTQLTDTRVKRNRLSNKPQKCDPQK
GVYVELGSESSEEFFKQASKTGLEDKAAVQISPQGKLEELESVEKGNENSCSAQPDKLCA
KEIAPPNVTGESDFSKEGSSKKSAQSVAECAKPDQVDVTECQSPPLNALPADLSPEQCDR
TGDSSPTVNRGTSFLESTEETDEEQTQSNSENKEFDLKDSSGSKLDKSKESVEAVEVSEP
ENDSFHDKELPEEKLLQPEKTLPSGTVNRVSRKRLKRSIQKVNEWFSKSNEIISSSYSLD
DSAGATDVSDEGDARSSDKESCISENTDPVVDSMEIAVAERNKRRSNQTTDSIKDKIFGK
TYRRERKSNPPSTVRDTLSATKKEDVAGDKSLNNSSRDRPNRKRKTAHVLQPEDFIRKKD
TEEAGGGPQSVSRCLGDAEKERCDGSGAVNESHLSRNRVDNNLTGGGASWKKATEKATSK
HRDGEPKMRVSDQKSTKKSSAARRCRHSTRTMCALQLVVDRNSVSPEPAEPQIDSYPSSE
EPRRADSEHTQVRRSRRLQALSEEMTKETGKGVIKEPRKNHGDRGGSVSGDQRNVAAQAA
ECKDLREPRGALSFEAVTGLKGGDLGANEMQVSLKSLSDRAETGKSLFSPAPSCQPSNGG
SFAPHSGSQDSEIPGSPVLLQPPAAPAEQTASHQTQEVTESLTAFPQERGHDSQSVPGDF
RTEKLPLAKTVLEMAKEAEDSDLDTQYLRNIFRHSKRLSFSLYQTPRQARAAENPDSETL
NPSLAAQGGNKGSKDLQAENLQEERTTAESLSEKEKLKSCESVDHVSCSAISTEDRQAVS
QAAKEGTLTPVRTGAAGSEAENQSLKGKLGNENPVSTDTGIAGELRQNPIRSNRSQSEQS
NTEEHDSKQTSLNTGHEISESSLKENTKVVDDKEPILHIQSGSIICPASCQQSPAEFSHE
VTGKKSSKRKQIEGNEEQATQTASTAMPECLVAEALRGNSDFTGSSDTPDGLLCSESEEN
TSFGDTDRREQSAVFVKGSNSALGEELHNRNAGSKPRSRGFPKPRRRAQKLPSSDEESCE
EEDPPCFQTLIFDKSASTPLQVDKQVTSVIEASARPDMLPHSRSNDDNIMQKVPEVAPGN
VCVSPSQQSECSVNLFSSQSMSEESVSEAQELKEPLPQADASEEVTSVNESKETLESCNG
RLKRTNTNSRDECQEDPTMGANLGEASGYESETSIVEDSYEPFSQGEILTTQQKNAMQNS
LKKLQQEMAVLEAALKQQGSQACEFLPVNSELPRASSERTCGMEQMGQEKERSPELLLPS
SESCLLKRSDLEKGPECDNVLKNKAACAKTKPVQEAVQEYRQCQLEAENAEEQESGTRQN
SSSVSSNLSANVVKSPNNSSSSIRPLNPRTAGATNGSVVSQNTNKSSGPAHRLKRSGCFP
APVLPSAAGKENAASPVVTKRKQMSIVASGLNHSEHLVVQKFVRRTQSTLSNHITEGTTH
VIMKTDEELVCERTLKYFLGIAGRKWVVSYQWVIQSLKEERILDEEKFEVRGDVINGRNH
QGPKRARQAGTGKIFKGFEICCCGPFTDMTTEHLEWMVELCGASVVKQLHLFTHSSNSTA
VVVVQPDAWKENTDYRAMQQQNNIAMVTREWVLDSVACYECQKIDAYLLF
NT seq 5373 nt   +upstreamnt  +downstreamnt
atggactcctcggtgattactgttgggcacatacaaaatgtgctttcggctatgcagaag
aacttggagtgcccgatatgcttggatgtggtacaagagccagtttcaacgaaatgtgat
cacatattctgcaggttctgcatgttcaaactgctcagcaagaagaagaaaggtgtggtg
cagtgtcctctgtgtaaggctgaagttaccaagaggagcctgaaagaaaattctagattt
aagcaagtcattgaaggattgttggaaactatccacgcttttgagcttgacactggagtg
aagtttttaaagagtcatcagattcataaaacatccacagaaaccactgctactgagttc
ctgggtaaagaaagttcagtcgttcaaagtaaaggcttcaggaacaggagaaagagtgct
gaagaaaatggacaagaaaacctcacctcgcaggaaactgctgtgaacactcagcttaca
gataccagggtcaaaaggaatcgcctgagcaacaaaccccagaaatgtgaccctcagaaa
ggggtttatgtggagctgggttctgaatcatctgaagagttttttaaacaggcaagcaaa
actgggttggaagacaaagctgcagttcagatttctccccaaggaaagctcgaagaactt
gagagtgttgagaaggggaatgaaaattcttgcagtgcacagcctgacaagctgtgtgcc
aaagaaatagcaccaccaaatgtcacaggtgaaagtgatttctcgaaggaaggctcaagc
aagaaaagcgctcagagcgtcgctgaatgtgccaaacctgaccaagtggatgtgactgag
tgccagagtcctcctttaaatgctcttcctgcagatctatctccagagcagtgtgacaga
acaggtgattccagccccacagtaaacaggggcacatcatttttggagagcacagaagaa
acggatgaagagcaaactcagtccaacagtgaaaacaaagagtttgacttaaaagatagt
tcagggagcaagctggataaaagcaaggaaagtgtggaagctgtggaggtgtctgaacct
gagaatgactctttccatgacaaagaacttcctgaggagaagctgcttcagccagagaag
acacttccctctggcaccgtgaatcgagtctccaggaagaggctgaagcgaagcattcag
aaggtcaatgaatggttctcaaaaagcaacgagattatatcttccagttattccctggat
gattctgctggagccactgatgtttcagatgaaggagatgcacgttcctcagataaggaa
tcctgtatttcagaaaacactgaccctgtggtggattccatggaaattgcagtggctgag
agaaacaagagacggtcaaaccaaacaacagatagcatcaaagacaaaatatttggaaaa
acatacagaagagagaggaaatcaaaccccccttctactgtgagagacactttatctgct
acaaaaaaggaagatgtggctggtgataagtccttgaataattccagcagggacagaccc
aaccgaaaaaggaagactgcccacgtcctgcaacctgaggatttcatcaggaaaaaagac
acagaagaggcaggtggaggccctcagagtgttagcaggtgccttggagatgctgaaaag
gaaagatgtgatggcagtggtgctgttaatgagagtcacctctctcggaatagggttgat
aataacctaacaggaggaggagcctcgtggaaaaaagctactgagaaggcgacgagcaag
caccgtgatggggagccaaaaatgcgtgtcagtgatcagaaaagcactaaaaaaagctct
gcagcgagaagatgcaggcattccaccaggaccatgtgtgctctgcagttagtagtggac
agaaactctgtttcccctgagccagctgagccacagatcgacagctatcccagcagcgaa
gagcccaggagagctgactcggagcacacccaggtcaggcgcagcaggagactccaggca
ctttctgaagaaatgacaaaagaaacgggaaaaggagtaataaaggaaccaagaaagaat
cacggtgatcgtggagggtctgtctctggagaccaaaggaatgtggcagctcaggctgct
gaatgcaaagacctgcgtgagcctcggggtgcgttgagtttcgaggcagtcaccggtctg
aagggaggggatctgggagcaaatgaaatgcaggttagcctgaagagtttatctgacaga
gcagaaactggaaaaagtctcttcagtcctgcaccttcatgtcagccttcaaacggtggt
tcctttgcacctcattcgggttctcaagacagtgaaataccaggtagccccgtcctcctc
cagcctcctgcagcgcctgctgagcaaactgcttcccatcagactcaagaggtgactgaa
tcacttactgcttttccacaggaacgtgggcacgattcacagagtgttccaggagacttc
agaaccgaaaagttgcccctggctaaaactgtactggagatggccaaggaagctgaggac
agtgacttagacactcagtacctgagaaacatattcaggcactcgaaacgcttgtccttc
agcctctatcagacccccaggcaggctcgtgcagcagaaaaccctgattctgaaacttta
aacccatcacttgctgctcagggaggaaataagggtagcaaagatttacaagcagaaaac
ttgcaagaagagagaacgactgctgaaagcttgagtgagaaagagaagcttaagagctgt
gagtctgttgatcatgtgagttgctctgccatcagcacagaagacagacaggctgtgtca
caggctgcaaaggaagggactctgacaccagtgagaacaggggctgctgggtctgaggcc
gaaaaccaatcactaaaaggaaagctgggcaatgaaaaccctgtgtcaactgacacaggg
atagcaggtgagttgagacagaatccaatcagaagtaatagaagccaaagtgagcagagt
aacacagaagagcacgattccaaacaaaccagtttaaacacaggccatgaaatatcagaa
agcagtctgaaagaaaacactaaagttgttgacgacaaagaaccaattctgcatattcaa
tctggatcaatcatttgtccggcaagttgtcagcaaagccctgctgaattcagccatgag
gtcactgggaaaaaaagtagcaaaagaaaacaaatagaggggaatgaagaacaagcaacc
caaactgctagcacagcaatgcctgagtgtttagttgcagaggctcttagagggaacagt
gattttacaggttcgtctgacactcccgatggcttgctgtgctctgagagtgaagagaac
accagctttggtgacactgataggagagagcaatctgcagtgttcgtgaaaggaagcaac
agtgccctgggagaagaactccacaatagaaatgctggttctaagccaagatctcgaggt
tttccgaagccccgaaggcgagcacagaaactgccgtcttcggatgaagaatcctgcgag
gaggaagatccaccctgttttcagacactgatatttgacaaatcagcaagcacacctctg
caggtcgataaacaagtgacatctgtgatagaggcctcagctaggcccgacatgctgcct
cacagtagaagtaatgatgacaatattatgcagaaagtgcctgaagttgctccaggcaat
gtgtgtgtttcaccaagccagcagtcagaatgctctgtcaacttattttcttcccagtcc
atgtctgaagaatcagttagtgaagcacaagagctgaaggaacctttgccacaagctgat
gcatccgaagaagtgaccagtgtgaatgagagtaaagaaactcttgagagttgtaatgga
aggctgaagaggaccaacactaactccagagatgaatgccaggaagacccaaccatggga
gcaaacctaggcgaagcatctgggtatgagagtgaaacgagcatcgtggaagattcatat
gaacctttctctcagggggaaatcctcaccacacagcaaaagaatgctatgcagaatagc
ctgaaaaagcttcagcaagaaatggcagtgcttgaagcagcactaaagcaacaaggaagc
caggcctgtgaatttttgcctgtcaatagcgagctgccacgtgccagtagtgaaagaaca
tgtgggatggaacaaatgggacaagaaaaagaaaggtctccagaattgttgcttccatct
tctgaatcctgtttgttaaagagatcagatctggagaaaggccctgagtgtgacaatgtt
ctaaagaacaaagctgcttgtgcaaagacaaaacctgtgcaggaagcagtgcaagaatac
aggcagtgtcagcttgaagcagaaaatgcagaggagcaggaatctgggaccaggcaaaac
agttcatctgtctcatcaaatctctctgcaaatgtggtcaagagtccaaataactcttcc
tcctccataaggcctcttaaccctagaactgcaggagccacaaatgggtctgttgtgtct
caaaacacaaataaaagctctggtccagcacacagattgaagagaagtggatgttttcct
gcacctgttctgcccagtgcagctgggaaagaaaatgctgcaagtccagttgtgaccaag
aggaaacaaatgtcaattgtggcatcaggtctgaatcacagcgaacatttggtggtccag
aagtttgtgagaagaactcagagcactttatctaatcacattacggaaggaacaacccat
gtcataatgaaaacagatgaggagctggtgtgtgaacggacactgaagtatttcctgggc
attgcaggaaggaaatgggtggttagttatcagtgggtaattcagtcacttaaagaagaa
aggatactggatgaggagaagtttgaagtcaggggagatgtcatcaacgggcgaaaccac
caaggtcccaagagggccaggcaggctgggactggaaagatctttaaaggctttgagatc
tgttgctgtggacctttcactgatatgactacagagcacctggagtggatggtggagctt
tgtggtgcctctgtggtgaagcagcttcatctcttcacccattcatcaaactctactgct
gttgtggttgtgcaaccagatgcttggaaggaaaacacagattatagagcaatgcagcag
cagaacaacattgccatggtgaccagggagtgggttttggacagtgtggcttgctatgag
tgccagaagattgatgcttaccttttgttctaa

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