Empidonax traillii (willow flycatcher): 114070626
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Entry
114070626 CDS
T05887
Symbol
SCN4A
Name
(RefSeq) sodium channel protein type 4 subunit alpha isoform X1
KO
K04837
voltage-gated sodium channel type IV alpha
Organism
etl
Empidonax traillii (willow flycatcher)
Brite
KEGG Orthology (KO) [BR:
etl00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
etl04040
]
114070626 (SCN4A)
Ion channels [BR:
etl04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
114070626 (SCN4A)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
IQ_SCN5A_C
PKD_channel
IQ
GPHH
FUT8_N_cat
Motif
Other DBs
NCBI-GeneID:
114070626
NCBI-ProteinID:
XP_027763947
LinkDB
All DBs
Position
Unknown
AA seq
1880 aa
AA seq
DB search
MRQRVRKRNPSSFLFPGWARPARKQNARMASLPFIPGPENLRPFTPASLAAIEQRMAEAE
ALRIKRQQVEMPEEEEVKPSSDLEAGKNLPLIYGDPPPELIGTPLEDLDPFYKDKKTFIV
LNKGKSIFRFSATPALYMLGPFHPIRRGAIKVLIHSLFSMFIMITILTNCVFMTMSNPPA
WSKNVEYAFTGIYTFESLIKILSRGFCIDDFTFLRDPWNWLDFMVISMAYITEFVDLGNI
SALRTFRVLRALKTITVIPGLKTIVGALIQSVKKLSDVMILTVFCLSVFALIGLQLFMGN
LRQKCVRWPPPNTTFLGDLELDNDTLVNSTFYDFVGDFAGNFTGNFTGNFTSNFTSNSTF
DFEAYISDEANFYFLEGALDALLCGNSSDAGKCPEGYQCMKAGRNPNYGYTSYDTFSWAF
LSLFRLMTQDFWENLFQLTLRSAGKTYMIFFVVVIFLGSFYLINLILAVVAMAYAEQNDA
TLLEEQQKEEEFQQLMEQLKKQQEEQEKMLQDRRSSSDSLPSSVAQKEQKEHDSDVNSDQ
DKAKDCNGQVIPKITLQRSDTVIDFNPTFEPEKQDLNHLTVGNQDGPGLEKRVGSAISVI
SNAVEELEEAHQKCPPWWYKFAHTFLVWNCCYPWVKLKEFVKLVVMDPFVDLGITICIVL
NTLFMAMEHYPMTEEFENVLSVGNLVFTGIFTAEMVLKLIALDPYEYFQQGWNIFDSFIV
TLSLVELGLANVQGLSVLRSFRLLRVFKLAKSWPTLNMLIKIIGNSVGALGNLTLVLAII
VFIFAVVGMQLFGKSYIECVCKISVDCTLPRWHMHDFFHSFLIVFRILCGEWIETMWDCM
EVAGQTMCLIVFMMVMVIGNLVVLNLFLALLLSSFSADSLAASDDDGEMNNLQIAIGRIT
RGIDFAKASLLTLLRQLWKGKKVAPEEEQEPSKRENSVLNHVDATQDTVKSGYLDGITGK
EYIFMDELDHMNFINNPSLTVQVPIASEESDLYEETSTQSETEDTTKNPLSSDNASSLCS
TVDYKPPAPEEEEVAEVAEESNEPEECFTEGCVKRFPCLYVDVTSEKGRRWWNIRKTCFR
IVEHDWFETFIVFMILLSSGALAFEDIYIEQRKVIRTILEYADKVFSYIFVIEMLLKWVA
YGFKVYFTNAWCWLDFLIVDVSLVSLTANWLGYSELGAIKSLRTLRALRPLRALSRFEGM
RVVVNALLGAIPSIMNVLLVCLIFWLIFSIMGVNLFAGKFYRCINTTTGELFDSSVVNNK
SGCMALLPTNEVRWVNVKVNFDNVGLGYLSLLQVATFKGWMDIMYAAVDSREIEEQPQYE
INLYMYIYFVIFIIFGAFFTLNLFIGVIIDNFNQQKKKFGGKDIFMTEEQKKYYNAMKKL
GSKKPQKPIPRPSNKFQGKVFDFVTRQVFDITIMILICLNMVTMMVETDDQSELKTSVLY
KINLVFIVIFTGECVLKMFALRHYYFTVGWNIFDFVVVILSILGIVLSDIIEKYFVSPTL
FRVIRLARIGRVLRLIRGAKGIRTLLFALMMSLPALFNIGLLLFLVMFIYSIFGMSNFAY
VKKEAGIDDIFNFETFGNSIICLFQITTSAGWDGLLNPILNSGPPDCDPELENPGSSVKG
NCGNPSIGIFFFCSYIIISFLIVVNMYIAIILENFNVATEESSEPLCEDDFEMFYETWEK
FDPDATQFIAYSTLSDFVDTLQEPLKIPKPNKIKLITMDLPMVAGDKIHCLDILFALTKE
VLGDSGEMDALKASMEEKFMAANPSKVSYEPITTTLKRKHEEVCATKIQRAFRRYLLRRS
VKQASYMYRQSKDEDAPSEEAPEKEGLIATKMQEIYGNSGAEVETTPAIGLEPIPSSETR
DAPEEAKAWDKERVVKESLV
NT seq
5643 nt
NT seq
+upstream
nt +downstream
nt
atgcggcagcgggtcaggaagaggaatccatcatcgtttctgtttccaggctgggcgcgg
ccggcccggaagcagaatgcgaggatggccagcctgcccttcatcccgggccccgagaac
ctgcgccccttcaccccggcctcgctggccgccatcgagcagcgcatggccgaggccgag
gcgctccggataaagaggcagcaggtggagatgcccgaggaagaggaggtcaagcccagc
agtgacctggaagccggcaagaacctacccctcatctatggtgacccgccccccgagctc
atcgggaccccgctggaggacctggaccctttctacaaggacaagaagacattcatcgtc
ctcaacaaagggaagtccatcttccgcttctcggccacccctgccctctacatgctgggg
cccttccaccccatccgcagaggagccatcaaagtgctcatccattcattattcagcatg
ttcatcatgatcactattttaaccaactgcgtgtttatgaccatgagcaaccccccggcg
tggtccaagaatgtggaatacgccttcactgggatatacacctttgagtccctcatcaag
atcctgtcgagaggtttctgcatcgacgacttcacattcctgcgcgacccgtggaactgg
ctggacttcatggtcatctccatggcctacatcaccgagtttgtggacctggggaacatc
tctgctctcaggaccttccgcgtcctccgcgccttgaagaccatcaccgtcataccaggg
ctgaagaccatcgttggggctctgatccagtcggtgaagaagctctcggacgtcatgatc
ctcacggtgttctgcctgagcgtgttcgccctgatcggcctccagctcttcatggggaac
ctccggcagaagtgcgtgcggtggccgccccccaacaccaccttcctgggggacctggag
ctggacaatgacacgttggtcaactccacattttacgactttgtgggtgactttgccggc
aacttcaccggcaacttcaccggcaacttcaccagcaacttcaccagcaacagcaccttt
gacttcgaggcctacatcagtgatgaagccaatttctacttcctggagggagcccttgat
gccctgctctgcgggaacagcagcgatgctgggaagtgccccgaagggtaccagtgcatg
aaggcagggaggaaccccaactacggctacaccagctacgacaccttcagctgggctttc
ctgtccctcttccgcctcatgacacaggacttctgggagaacctcttccagctgacactg
cgttcagcagggaaaacctacatgatcttcttcgtggtggtcatcttccttggctccttc
tacctcatcaacctcatcctggcggtggtggcgatggcttacgctgagcagaacgacgcc
acgctgctggaggagcagcagaaggaggaggaattccagcagctcatggagcagctgaag
aagcagcaagaggagcaagagaagatgttgcaggacaggaggtccagcagcgattccctg
cccagcagcgtggcccagaaggagcagaaggagcacgactcggacgtcaacagcgaccag
gacaaggcaaaggactgcaacgggcaggtgatccccaagatcaccctgcagagatccgac
acggtgattgatttcaatccaacttttgagccggagaaacaggacctcaaccacctcact
gtgggcaaccaggacgggccaggactcgagaagagggtgggaagtgccatcagtgtcatc
tccaacgctgtggaagagctggaggaagctcaccagaagtgcccgccctggtggtacaaa
ttcgcccacactttcctggtctggaattgctgttatccgtgggtgaagctgaaggagttt
gtcaagctggtggtgatggaccccttcgtggacctgggcatcaccatctgcatcgtgctc
aacacgctcttcatggccatggagcactaccccatgacagaggagtttgagaacgtgctg
tctgtggggaacctggtcttcacagggatcttcacggcggagatggtcctgaagctcatt
gctctggatccctacgagtacttccagcagggctggaacatcttcgacagcttcatcgtc
accctgagcctggtggagctgggcttggccaacgtgcaagggctctccgtgctccgctcc
ttccgcttgctgagggtcttcaagctcgccaagtcctggcccaccctcaacatgctcatc
aagatcatcggcaactccgtgggcgccctggggaacctcacgctggtgctggccatcatc
gtcttcatcttcgccgtggtggggatgcagctcttcgggaagagctacatcgagtgcgtg
tgcaagatctccgtggactgcaccctgccccgctggcacatgcacgacttcttccactcc
ttcctcatcgtcttccgcatcctctgcggggagtggatcgagaccatgtgggactgcatg
gaggtggccggccagaccatgtgcctcatcgtcttcatgatggtcatggtcatcgggaac
ctcgtggtgctgaacctgttcttagctttgctgctgagctccttcagcgccgacagcctg
gcagcgtcggacgacgacggcgagatgaacaacctgcagatcgccatcggcaggatcacc
cgcggcatcgacttcgccaaggcctccctcctcacgctgctccggcaactctggaagggc
aagaaggtggccccagaggaggagcaggagcccagcaagagggagaactccgtgctgaat
cacgtggacgccacccaggacaccgtcaagtcggggtacctggatgggatcaccggcaaa
gagtatattttcatggacgagctggatcacatgaatttcatcaacaaccccagcctgacg
gtgcaagtccccatcgcctcggaggagtctgacctctacgaggagaccagcacccagtct
gaaaccgaggacaccaccaagaaccccctgagcagcgacaacgcctcgtccctgtgcagc
accgtggattacaaaccccccgcgcccgaggaggaggaggtggcagaggtggccgaggag
agcaacgagcccgaggagtgtttcaccgaaggctgcgtgaagaggtttccctgcctctac
gtggacgtcaccagcgagaaggggaggaggtggtggaacatccggaaaacctgcttccgc
atcgtggagcacgactggttcgagaccttcatcgtcttcatgatcctcctcagcagtggg
gcgctggcgttcgaggacatctacatcgagcagcggaaggtgatccgcaccatcctggaa
tatgccgacaaggtcttctcctacatcttcgtcatcgagatgctgctcaagtgggtggcc
tatggcttcaaggtgtacttcaccaatgcctggtgctggctggatttcctcattgttgat
gtttccctggtcagcctgacagcaaactggctgggatactccgagctgggagccatcaag
tccctgcggacgctgagggctctgagaccactgcgtgccctgtcccgatttgaaggcatg
agggtagtggtgaacgccttgctgggcgccatcccctccatcatgaacgtgctgctggtc
tgcctcatcttctggctgatattcagcatcatgggggtgaacctcttcgcggggaagttc
taccggtgcatcaacaccaccacgggggagctcttcgacagcagcgtggtgaacaacaag
agcggctgcatggccctcctgcccaccaacgaggtcagatgggtcaacgtcaaggtcaac
ttcgacaacgtgggcttgggatacctctccctgctgcaggtggcaaccttcaaaggctgg
atggatatcatgtacgctgctgtggactcacgcgagattgaagagcagccacagtatgag
atcaacctctacatgtacatctactttgtcatcttcatcatcttcggcgccttcttcacc
ctcaacctcttcatcggcgtcatcatcgacaacttcaaccagcagaagaaaaagtttgga
ggcaaagacatcttcatgacagaagagcagaagaaatactacaatgccatgaagaagctc
ggctccaagaaaccccagaagcccatccccaggccatcgaacaagttccaagggaaggtg
tttgacttcgttaccaggcaagtgttcgacataaccatcatgatcctgatttgcctcaac
atggtgaccatgatggtggaaacagatgatcagagcgagctcaaaacatctgtgctctac
aagataaacctggtcttcatcgtcatcttcaccggggagtgcgtgctcaagatgttcgcc
ctgcgtcactactacttcaccgttggctggaacatctttgacttcgtggtggtcatcctc
tccatcttaggtatcgtcctctccgacatcatagagaagtacttcgtgtcacccaccctc
ttcagggtcatcaggctggcgaggatcggccgtgtcctccggctgatccgaggggcaaaa
ggcatccggactctcctctttgctctgatgatgtccctgcccgccctgttcaacatcggc
ctcctgcttttcctcgtcatgttcatctactccatcttcgggatgtccaacttcgcctac
gtgaagaaggaggcggggatcgacgacatcttcaacttcgaaaccttcgggaacagcatc
atctgcctcttccagatcaccacgtcggccgggtgggatgggctcctcaacccaatcctc
aacagcgggcccccggactgcgaccctgagctggaaaacccgggaagttcggtgaaaggg
aactgtgggaacccctccattggcatcttcttcttctgcagctacatcatcatttccttt
ctcatcgtggtgaacatgtacatcgccatcatcctggagaacttcaacgtggccacggag
gagagcagcgagcccctctgcgaggatgacttcgagatgttttatgaaacctgggagaag
ttcgacccggacgccacccagttcatcgcctacagcaccttgtctgactttgtagacacc
ttgcaggagcccctgaaaattcccaagccaaacaagatcaaactaatcaccatggatctc
ccgatggttgccggggacaaaatccactgcctggacatcctctttgccctgactaaggaa
gtgctgggagactcgggagagatggacgccctgaaggccagcatggaggagaagttcatg
gccgcaaacccctcgaaggtctcctacgagcccatcaccaccaccctgaagaggaaacac
gaggaagtgtgtgccaccaaaatccagagggccttccggaggtacctgctgaggcgctcg
gtgaaacaggcatcctacatgtacaggcagagcaaggacgaggacgcgccgagcgaggaa
gcgcccgagaaggagggtctgattgccaccaaaatgcaggagatctatgggaacagtggg
gcagaggtggagacaacccctgccattggcctcgagcccattcccagctcagagacgcga
gatgctcccgaggaagcgaaagcttgggataaggagcgcgtggtgaaggagtcgctggtg
taa
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