Winslowiella toletana: RIN69_16235
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Entry
RIN69_16235 CDS
T09410
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
eto
Winslowiella toletana
Pathway
eto03030
DNA replication
eto03410
Base excision repair
eto03420
Nucleotide excision repair
eto03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
eto00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RIN69_16235 (ligA)
03410 Base excision repair
RIN69_16235 (ligA)
03420 Nucleotide excision repair
RIN69_16235 (ligA)
03430 Mismatch repair
RIN69_16235 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
eto03032
]
RIN69_16235 (ligA)
03400 DNA repair and recombination proteins [BR:
eto03400
]
RIN69_16235 (ligA)
Enzymes [BR:
eto01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RIN69_16235 (ligA)
DNA replication proteins [BR:
eto03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RIN69_16235 (ligA)
DNA repair and recombination proteins [BR:
eto03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RIN69_16235 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RIN69_16235 (ligA)
MMR (mismatch excision repair)
DNA ligase
RIN69_16235 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RIN69_16235 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
5_3_exonuc
DZR_2
Motif
Other DBs
NCBI-ProteinID:
WNN43233
LinkDB
All DBs
Position
complement(3470130..3472148)
Genome browser
AA seq
672 aa
AA seq
DB search
MESIQNKITHLRTTLVHHEYQYHVMDAPEVPDAEYDRLMNELRELEAQHPELITPDSPTQ
RVGAAPLSAFEQVRHEVPMLSLDNAFDEATYLAFDKRVKDRLKTTDDITFCCELKLDGLA
VSLLYEEGLLVQAATRGDGTTGENITANVRTIRAIPLRLKGENIPARVEVRGEVFMPQAG
FEKLNEEARRSGNKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGFGLLEGGEMPASHW
QRLQQFKAWGLPVSDRIRLCHSAEEVLEFYHQVEADRPTLGFDIDGVVIKVDSQQLQEQL
GFVARAPRWAVAFKFPAQEQMTTVRDVEFQVGRTGAITPVARLEPVQVAGVMVSNATLHN
ADEIERLGLQIGDRVVIRRAGDVIPQVVGVVESERPQDTRAIVFPEHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRAMDVDGMGEKIIDQLVDKEYVKTPADLFRLSAG
VLTGLDRMGPKSAQNVVDALNKAKQTTLARFLYALGIREVGEATAANLAAHFGELEKIMD
ADLDALIAVPDVGTVVASHLRNFMEEESNREVIRQLVEDIGIHWPAVEVIKPEEIDSPFS
GKTVVLTGSLTILSRDDAKARLVALGAKVSGSVSKKTDLVIAGEAAGSKLAKAQELGIEV
IDEAEMIRLLGE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaatccatacagaacaaaatcacccatttgcgaaccacgcttgttcatcacgaatac
cagtatcacgttatggatgcgccggaagtgccggatgcagaatatgatcgcctgatgaat
gaactgcgtgaacttgaagcgcaacaccctgaattaatcactcccgattcaccgacgcaa
cgcgtcggtgccgcgccactgagcgcatttgagcaggtgcgtcatgaagtgccaatgctg
tcgctggataacgcctttgatgaagccacttacctcgctttcgataagcgggtaaaagat
cggctgaaaaccactgacgatattaccttctgctgcgaactgaaacttgatggcctggcg
gtcagcctactgtacgaagagggtttgctggtacaggcggcaacccgtggcgatggcacc
accggtgagaatatcactgctaacgtgcgcaccattcgcgccattcctttgcgtctgaag
ggggaaaacattccggcacgcgttgaagtgcgcggtgaagtgtttatgccgcaggcgggc
ttcgaaaagcttaatgaggaagcacggcgcagcggcaataaggtgtttgccaacccgcgt
aatgccgcagcaggctcattgcgccagcttgacccgcgcattaccgctaaacgtccactg
acgtttttttgctacggctttggcctgctggagggcggagaaatgcctgccagccactgg
cagcgtctgcagcagtttaaagcctggggcttaccggtcagcgatcgtattcgcctgtgt
cacagtgcggaagaggtgctggaattttatcatcaggttgaggccgatcgcccgacgctc
ggttttgatatcgatggcgtagtgatcaaggtcgactctcagcagttgcaggagcagctt
ggctttgtggcgcgtgcgccgcgctgggcggtggcgtttaagtttccggcgcaggagcag
atgaccacggtgcgtgacgtcgagtttcaggtcggacgtaccggcgccatcacgccggta
gcgcggctggaaccggtgcaggttgccggcgtgatggtcagtaatgccacgctgcataac
gccgatgaaattgagcgccttggcttacagattggtgaccgggttgtgattcgtcgtgct
ggtgacgtcattccgcaggtggtcggcgtggtggagtcagaacgcccgcaggatacgcgc
gcgattgtgttccccgaacattgtccggtgtgcggctctgatgttgagcgggttgagggg
gaagccgtgacccgctgtaccggcggcctgatttgcggtgcgcagcgtaaagaagcgctc
aagcatttcgtctcgcgccgcgcgatggatgttgacggtatgggcgagaagattatcgat
cagctggtggacaaagagtatgtcaaaacgccagccgatctgttccgcctgagcgcaggt
gtgctgaccggattagatcgcatggggccgaaatcggcacagaatgtggtcgacgcgctg
aataaagccaaacagaccacgctggcgcgttttctctatgcgctaggcattcgggaggtg
ggagaagccaccgcagccaatctggcggcgcattttggcgagctggaaaaaatcatggat
gctgacctggacgcgctgatcgcggtaccggatgttggcaccgtggtggccagccatctg
cgtaattttatggaagaagagagtaaccgcgaggttattcggcaactggttgaggatatc
ggcattcactggccggcagtggaagtgattaagccagaagagatcgacagtccgttctct
ggcaaaaccgtggtgttgaccggtagcctgactattctgtcgcgtgatgacgccaaagcc
aggttagtcgcactgggcgctaaagtgagcggcagcgtgtcgaagaaaaccgatctggtg
attgccggtgaagcggcaggctcgaaactggcgaaggcgcaggagctgggcattgaagtc
attgatgaagctgaaatgattcgtctgctgggtgagtaa
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integrated database retrieval system
