Erwinia tracheiphila: LU633_18060
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Entry
LU633_18060 CDS
T07827
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
etp
Erwinia tracheiphila
Pathway
etp03030
DNA replication
etp03410
Base excision repair
etp03420
Nucleotide excision repair
etp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
etp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LU633_18060 (ligA)
03410 Base excision repair
LU633_18060 (ligA)
03420 Nucleotide excision repair
LU633_18060 (ligA)
03430 Mismatch repair
LU633_18060 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
etp03032
]
LU633_18060 (ligA)
03400 DNA repair and recombination proteins [BR:
etp03400
]
LU633_18060 (ligA)
Enzymes [BR:
etp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LU633_18060 (ligA)
DNA replication proteins [BR:
etp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LU633_18060 (ligA)
DNA repair and recombination proteins [BR:
etp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LU633_18060 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LU633_18060 (ligA)
MMR (mismatch excision repair)
DNA ligase
LU633_18060 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LU633_18060 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
HHH
DUF4874
5_3_exonuc
DZR_2
Nlig-Ia
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
UIA95345
LinkDB
All DBs
Position
complement(3456582..3458600)
Genome browser
AA seq
672 aa
AA seq
DB search
MESVQDKITALQTTLRHYEYQYHVLDAPAVPDAEYDRLMAELRQLEEANPQLIAPDSPTQ
RVGAAPLSVFEQVTHDVPMLSLDNAFDETSYLAFNRRLQERLKRTDEITFCCELKLDGLA
VSLLYENGLLIRAATRGDGTTGENITANVRTIRAVPLRLVGENVPTRIEVRGEVFMPQAG
FEVLNDEARKTGNKVFANPRNAAAGSLRQLDPRITARRPLAFLCYGVGLVEEGELPHSHW
DRLQQLKMWGLPVSNRIQLCNSPAEVLAYYHNVKQERATLGFDIDGVVIKVDSQDLQKQL
GFVARAPRWAVAFKFPAQEQITTVRDVEFQVGRTGAITPVARLEPVQVAGVMVSNATLHN
ADEINRLGLRIGDRVIVRRAGDVIPQVVGVMESERSLDAKEVVFPSHCPVCGSDIERVEG
EVVARCTGGLICGAQRKGALKHFVSRRAMDVDGLGDKIIDQLVEKEYVKTPADLFFLSTG
KLTGLDRMGVKSAQNVVNALEKAKKTTLARFLYALGISEVGEATAANLAAHFGSLEKIID
ADIDSLIAVQDVGAVVAAHVRNFMGEESNREVIRQLTEEAGVSWPAVTVVNAEEIDSPFA
GKTVVLTGSLSVLSRDEAKDRLTALGAKVSGSVSKKTNLVIAGEAAGSKLAKAQELGIDV
IDEAEMIRLLGE
NT seq
2019 nt
NT seq
+upstream
nt +downstream
nt
atggaatccgtacaagacaaaatcaccgccctgcaaaccacgcttcgccattatgaatat
caatatcacgttctggatgcacccgcagtgccggatgcagaatatgatcggctgatggct
gaactccgccagctggaagaagcgaatccgcagctgatcgcgccggattcccccactcag
cgcgttggcgctgcaccactgagcgtctttgagcaagtcactcatgatgtaccaatgtta
tctctggataatgcttttgatgaaacgagctaccttgcgtttaatagacggctacaggaa
agattaaagcgaactgatgaaatcaccttctgctgtgaactaaagctggatggtcttgcc
gtcagtcttctttatgaaaatggattacttattcgtgctgcaacccgcggtgatggcacc
acgggtgaaaatataacggccaacgttcggactatccgcgcggtgccgttacggttggtg
ggtgaaaacgtgccgacacgaattgaggtgcgtggcgaggtttttatgccacaggcgggt
tttgaagtgcttaatgacgaagcgcgtaaaacgggtaataaagttttcgccaacccccgc
aatgccgctgccggttcactgcgccaacttgacccccgcattactgctcgccgcccgctg
gcttttttatgttatggggttgggctggttgaagagggggaattgcctcacagccactgg
gatcgtctgcaacagcttaagatgtgggggctaccggttagcaatcgcattcagctgtgc
aacagcccggcagaggttctggcctattatcataacgtcaaacaggaacgagcgaccctg
ggttttgatatcgatggcgtggtaatcaaagttgactcgcaggatctgcaaaagcagctt
ggatttgtggcaagggcaccacgttgggctgttgccttcaaatttcccgcacaggagcag
ataactaccgtgcgggatgttgagttccaggtggggcgtacgggcgctattaccccggtt
gctcgccttgagcctgtgcaggttgctggagtgatggtcagtaatgcgactttgcataat
gctgatgaaatcaatcgacttggacttcgcattggcgatcgcgtgatcgtccggcgggct
ggcgatgttatccctcaggtggtcggcgtaatggaatcagagcggtcactggatgcaaaa
gaggttgtttttccatcacattgtccggtttgcggctcagatattgagcgggtcgaaggc
gaggtggttgcacgttgtaccggggggcttatctgcggtgcgcagcgaaagggtgcgtta
aaacactttgtctcacgccgggcaatggatgtggatggccttggcgataaaatcatcgac
caactggttgaaaaagaatatgtcaaaacgccagccgatctcttttttctcagtactggc
aaactgaccggtcttgaccgcatgggcgtaaaatcggcacagaacgtggtcaatgcgctg
gaaaaggcgaaaaaaacaaccttggctcgattcctttatgcgcttggtatcagcgaagtg
ggagaggccacggccgcaaatcttgctgcacattttggctctctggaaaaaattattgat
gcggatattgacagcttaattgccgttcaggatgtaggggcagtagtggctgcacatgtt
cgcaattttatgggtgaagaaagtaaccgtgaagtgattcgtcagttgactgaggaagcc
ggggtatcctggcccgcagtaacggttgtgaacgcagaagaaattgacagtccttttgca
ggtaaaacggtggtgctaaccggttcgctgtcagtgttgtctcgcgatgaagcaaaagac
cgtttgaccgcactgggtgcaaaagtcagcggcagcgtgtcgaaaaaaaccaatctggtg
attgccggggaagcggcaggttctaagctggcgaaagcccaggagctgggaattgatgtt
attgacgaagcagaaatgatccgtttactgggtgagtag
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