Endosymbiont 'TC1' of Trimyema compressum: AZF37_07505
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Entry
AZF37_07505 CDS
T07734
Name
(GenBank) hypothetical protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
ett
Endosymbiont 'TC1' of Trimyema compressum
Pathway
ett03030
DNA replication
ett03410
Base excision repair
ett03420
Nucleotide excision repair
ett03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ett00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
AZF37_07505
03410 Base excision repair
AZF37_07505
03420 Nucleotide excision repair
AZF37_07505
03430 Mismatch repair
AZF37_07505
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ett03032
]
AZF37_07505
03400 DNA repair and recombination proteins [BR:
ett03400
]
AZF37_07505
Enzymes [BR:
ett01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
AZF37_07505
DNA replication proteins [BR:
ett03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
AZF37_07505
DNA repair and recombination proteins [BR:
ett03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
AZF37_07505
NER (nucleotide excision repair)
GGR (global genome repair) factors
AZF37_07505
MMR (mismatch excision repair)
DNA ligase
AZF37_07505
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
AZF37_07505
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
BRCT_2
PTCB-BRCT
Nlig-Ia
HHH
DZR_2
Motif
Other DBs
NCBI-ProteinID:
AMP21026
LinkDB
All DBs
Position
complement(1220395..1222392)
Genome browser
AA seq
665 aa
AA seq
DB search
MTKKEAKEKNESLTKILNKANEDYYLYDMPTLADSEFDDYMHQLIELEKEYPEFLKDTSP
TQKVGGAPLVLFSTYTHRYPLLSLSNAFSGEDLDSFNGRCEKTLEKTELQYIGELKIDGL
SIALIYQKGKLVVGATRGDGFIGENVTHNVRMIKDIPLELPVPIDLEIRGEVYMDNDTFV
KLNKERVEAGLAEFRNPRNGAAGSLRQLDSKETKKRHLSSFFYEITYLKGKDIETQEEAL
EYLESLGFSTNKDRLLGSIEEMIAFCETIVEKRGHLSYGIDGVVIKVNNIRDQIELGSTT
KSPRWAIAYKFPPEQQITKVEDISISVGRTGVLTPVAELTPVLIGGSVVSRASLHNEDYI
KEKDIRAGDYVVIQKAGDVIPEVVKVVLDRRQEDLVPFVFPTRCPVCNSPVIRIAGEAGH
RCTGELYCPAQWVKGLIHFASREAVDIDGLGEKIVELFVNEKLISNPGDIYRLKKDDIEK
LEGFREKSANNLVEAISKSKQRGLGPLLFAFGIPLVGNKSAKVLARYFRTMGALLKAKKE
EFLNVEDVGEKMADSLVRFFSEERNRKIIEDLKNQGVMMEETFVLKGSIFKGKTIVLTGT
LPHYDRKEMMKLIEDYGGKVSTSVSKKTDYVLAGSEAGSKLEKANKLGIEVLDEEGLLKL
LNKEA
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atgactaaaaaagaggctaaagaaaaaaatgagtctttaacaaaaatattgaataaagcc
aatgaggactattatctttatgatatgcctacccttgcagacagcgaatttgatgattat
atgcatcaattaatagagttagaaaaggagtatccagaatttttaaaagatacttcccca
actcaaaaggtaggaggggctcctttagttttattttccacatatactcatcgttatccc
ttgttaagtttaagtaatgctttttcaggagaagatttagatagttttaatggacgttgt
gaaaagactctagaaaaaacagagcttcaatatattggagagttgaaaattgatggattg
tctattgctctaatctatcagaaaggaaagttagttgttggtgcaacgaggggcgatggc
tttattggtgaaaatgtaactcacaatgtaagaatgattaaggatattcctttagaatta
cctgttcctattgatttagaaatcagaggagaagtctatatggataatgatacttttgta
aagcttaataaagaacgggtagaagccggtttagcggaatttagaaatccccggaatgga
gcagcaggttctttacggcaactagattctaaggaaactaaaaagcgtcacttgtcttct
ttcttttatgaaataacatatcttaaaggtaaagatattgaaactcaggaagaggcttta
gaatatttagaatctttaggtttttctactaataaggatcgacttttagggtcaattgaa
gaaatgattgctttctgtgaaactattgtagaaaaaagaggtcatctttcatatggtatt
gatggcgttgttataaaagtaaataatattagagatcaaattgaattaggttctactact
aaaagtccacgctgggcaattgcctataaatttccgccagaacagcaaattacaaaggtt
gaggatatttctatttctgttgggcgtacaggtgtattaacgccggtggctgaattaacc
cctgttctaattggcggttcagttgtcagtagagcttccctgcacaatgaggactatata
aaagaaaaagatattagagcaggtgactacgttgttattcaaaaagctggtgatgtaatt
ccggaagtagtaaaagtagtattggataggcgacaagaggatttagttccttttgttttt
cctactagatgcccagtttgtaattctcctgtaattcgcattgctggagaggccggccat
cgttgtacaggtgaactctattgtccagcccaatgggttaaaggattaattcattttgct
tctagagaagccgtggatatagatggattgggagaaaaaattgtcgagttattcgtaaat
gagaaactcattagtaatccaggcgatatctataggttgaaaaaagatgatatagaaaaa
ttagaaggttttagggaaaaatcagcaaataatttagtagaagcaattagtaaaagcaaa
cagagagggttaggtccattattgtttgcttttggaatccccttagttggtaataaatct
gctaaagtactggccagatattttaggactatgggtgctcttttaaaagctaaaaaagaa
gagttccttaacgtagaagatgtaggggaaaagatggctgatagtctagttaggtttttc
agtgaagagcgcaatcgaaaaattattgaggatttaaaaaaccaaggagtaatgatggag
gaaacctttgttttaaaaggtagcatatttaaaggaaaaactattgtcctaacaggaacc
ttgcctcattatgatagaaaagaaatgatgaaactcattgaagattatggtggcaaagta
tctaccagcgtttcaaagaaaacggactatgttttagctggctctgaagcaggcagtaaa
ttagaaaaagccaacaaacttggcattgaagtattagatgaagaaggattactaaaatta
ttaaataaggaggcgtaa
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