Eutrema salsugineum (saltwater cress): EUTSA_v10003252mg
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Entry
EUTSA_v10003252mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K12608
CCR4-NOT complex subunit CAF16
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EUTSA_v10003252mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
eus03019
]
EUTSA_v10003252mg
Messenger RNA biogenesis [BR:
eus03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
EUTSA_v10003252mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
AAA_21
AAA_29
nSTAND3
AAA_25
ORC-CDC6-like
SMC_N
AAA_5
AAA_28
AAA_23
AAA_15
NACHT
AAA
AAA_18
SRP54
PduV-EutP
AAA_30
AAA_33
Zeta_toxin
AAA_22
DLIC
AAA_24
Arf
AAA_16
AAA_14
AAA_7
DUF5906
Motif
Other DBs
NCBI-GeneID:
18020687
NCBI-ProteinID:
XP_006403140
UniProt:
V4LXH8
LinkDB
All DBs
Position
Unknown
AA seq
287 aa
AA seq
DB search
MAEKDATPRSDGNNDGAIRVCGMQFSYEAQDSVFFDFNLDLPAGSRCLLVGANGSGKTTL
LKILAGKHMVGGKNVVQVLNRSAFHDTQLVCSGDLSYLGGSWSKTAGSAGEIPLQGDFSA
EHMIFGVEGIDPVRREKLIDLLDINLQWRMHKVSDGQRRRVQICMGLLHPFKVLLLDEVT
VDLDVVARMDLLEFFKEECEQRGATIVYATHIFDGLETWASHLAYIHGGELKLSAKLNEI
KDLKTSPNLLSVVESWLRSETNVEKKTKKKPVVTSPFMSSRQMAYYR
NT seq
864 nt
NT seq
+upstream
nt +downstream
nt
atggcggagaaagatgcgacgccgagaagcgacggcaacaatgacggtgcgattagggtt
tgcgggatgcagttttcttacgaagcccaggattctgttttcttcgatttcaacctcgat
ctccccgccggatctcgttgtctcttggttggtgccaatggatctgggaagacgacttta
ttgaagattttagctgggaagcatatggttggagggaagaacgttgtacaagttctgaat
cggtcagcttttcatgatacacagcttgtttgtagtggtgacttgtcttaccttggaggc
tcatggagtaaaaccgctggttctgctggtgagattcctcttcagggagacttctcagca
gagcatatgatatttggagttgaagggattgatcctgtgagaagagagaagttgattgat
cttcttgatatcaatcttcaatggcgtatgcacaaggtttctgatgggcagagacgccga
gttcagatatgtatgggtcttttacatccattcaaggtattattactggatgaggttact
gtggatctcgacgttgttgctaggatggatttgttggaattcttcaaagaagaatgtgaa
caaagaggagcaacaattgtgtatgcaactcatattttcgacggactagagacgtgggct
agtcatctagcgtacattcatggcggggagctgaaactctcggccaagctaaacgagatc
aaggatttgaaaacctcaccaaacttactctctgtggttgagtcgtggcttcgctctgaa
accaatgtcgagaagaagaccaagaagaaacctgttgttacctctccatttatgtcgtct
agacaaatggcttattaccgatga
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