Eutrema salsugineum (saltwater cress): EUTSA_v10012474mg
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Entry
EUTSA_v10012474mg CDS
T02985
Name
(RefSeq) hypothetical protein
KO
K10777
DNA ligase 4 [EC:
6.5.1.1
]
Organism
eus
Eutrema salsugineum (saltwater cress)
Pathway
eus03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
eus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EUTSA_v10012474mg
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
eus03400
]
EUTSA_v10012474mg
Enzymes [BR:
eus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EUTSA_v10012474mg
DNA repair and recombination proteins [BR:
eus03400
]
Eukaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
DNA Ligase 4 complex
EUTSA_v10012474mg
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_N
BRCT_2
BRCT
DNA_ligase_A_C
PTCB-BRCT
RNA_ligase
DNA_ligase_IV
DUF503
Motif
Other DBs
NCBI-GeneID:
18019386
NCBI-ProteinID:
XP_006401236
UniProt:
V4LG43
LinkDB
All DBs
Position
Unknown
AA seq
1220 aa
AA seq
DB search
MTEEIKFSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFVAVRLIIPALDRERGS
YGLKESVLATCLIDALGVSRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGM
ASGGLTIKELNDLLDRLASSENRAEKTSLLSTLIQKTNAQEMKWVIRIILKDLKLGMSEK
SIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRSGDVNAAW
KKLHGKDVVAECKFDGDRIQIHKNGTEIHYFSRNFLDHSEYAHAMSDLIVQNILADKCIL
DGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLKER
HELLRKVVKPLKGRLEVLVPEGGLNVHRPSGEPSWSIVAHSAADVERFFKETVENRDEGV
VLKDLGSKWEPGDRSGKWMKLKPEYIRAGSDLDVLIIGGYYGSGRRGGEVAQFLVALADR
AEANVYPRRFMSFCRVGTGLSDDELDTVVSKLKPYFKKNEHPKKAPPSFYQVTNHSKERP
DVWIESPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQAFVELV
NSSNGTTQKQKESENTQDNPKAIKSSRRGEKKNVSLVPSQFTQTDVSDIKGKTSIFSNMI
FYFVNLPRSHSLDTFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQASKRQRDVIHFS
WFLDCCSRNNLLPLQPKYFLHLTDASRTKLQDEIDEFSDSYFWDLDLEGLKQVLSNAKQS
EDSKSIEYYKKKLCPEKRWSCFFGCCIYFHPYSQTLSTEEEALLGIMAKRLALEVLMSGG
KVSNNLTHASHLVVLAIAEDSLDFTSVSKSSFSEMEKRRLLKRGLHVVSAHWLEDSLQRE
QKLCEDVYTLRPKHMEESDTEESDNSEHDTTEEASCGNAQTEEPASSKTVRGRSNARASS
KRGRSSTNSLQRVQRRRGKQPSKIGGDETEEGDTSEEKVSTRLSDIAEGTDSLGEAQRNS
RRGKSAKRGKSRVGQTQRVQRSRRGKKPSKIGGDESEEDDDFDDRKHEYAEAEESNAAGR
SVEDNNEETREPDVAKYTESLQRDNTVAVEEASQDSRNANTEMDTKEKLQMHEDPVQAML
MDMIPSLSLKNTETSNRTTGESSRLANVSGECESSEKRKLDGETDATSVNAEEDADAIPP
PVKKKKVSYRDIAGDLLKDW
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atgacggaggagatcaaattcagtgttctagtgtctctcttcaactggattcagaagagc
aaaacctcttctcagaaacgctctaagttccgaaagtttctagacacgtactgcaaaccc
tccgactacttcgtcgctgtccgcctcattataccggcgcttgaccgagaacgcggtagc
tacggtctcaaggaatcggtgctcgccacgtgtctcatcgatgccctcggcgtctctcgc
gatgctcccgacgccgttcgtcttctcaattggcgcaagggtggaaccgctaaggctggg
gccaacgccggaaacttttccctaattgccgctgaggtactccaacgtaggcaaggaatg
gcttcgggtgggttgactattaaggaattgaatgatttgcttgatcgtttagcttcgagt
gagaacagagcagaaaaaacttctcttctttccactctgattcagaagacgaatgcacag
gaaatgaagtgggtaattaggatcattcttaaagatttgaaattgggaatgagcgagaag
agcatttttcaggagttccatccagatgctgaggacttgtttaatgtcacatgtgacttg
aaactagtctgtgaaaagctgagggatcgacaccagcggcacaagcgccaggatatagag
gttggaaaagccgtacgaccccagttagctatgcgcagcggtgatgtaaatgctgcttgg
aagaagctacacgggaaagatgttgttgctgaatgcaaatttgatggggatcgcatacaa
atacacaaaaatgggactgagatacattacttctctaggaacttccttgaccattctgaa
tatgcacatgctatgtcggatcttatcgtacaaaacatattggctgacaagtgtatactt
gatggtgaaatgttggtctgggatacatctcttaatcggtttgctgagtttggttcgaac
caggaaatagccaaggcagcaagggaaggtcttgacagccatagacagttatgttatgtt
gcctttgatgttctttatgttggagatactagcgtcatccaccagagtttaaaggaacga
catgaactcctgaggaaagttgttaagcctttaaaaggtcgacttgaagttttagtacct
gaaggtggtctcaacgttcatcgtccttcaggggaacctagttggtctattgttgctcat
tctgcagctgatgttgagcgatttttcaaagaaacagtggaaaacagagatgaaggagtt
gtacttaaagacctgggatctaaatgggaacctggagatcgtagtggcaagtggatgaag
ttgaagcctgaatacattcgggctggttctgatctagatgttcttataataggaggatac
tatggctctgggcgtcgaggaggggaggtagcacagtttctcgtcgcattggctgaccgg
gcagaggcgaatgtgtatcccaggcgatttatgtctttttgtagagttggcacaggactt
tctgatgatgagcttgacactgttgtaagcaaactgaagccttatttcaaaaaaaatgaa
cacccaaagaaggctccaccaagcttttatcaggtcacaaatcactcaaaagagagaccg
gacgtttggattgaaagcccggaaaaatcaataatactttccatcaccagtgacattagg
acaataaggtctgaggtgtttgttgcaccttacagcctgaggtttcctcgtattgataaa
gtaagatatgacaaaccttggcatgaatgtctcgatgtgcaggcttttgtggaattggtg
aactcgagtaacggcaccacacagaaacagaaggaatctgaaaacacacaggacaatccg
aaagccattaaatcctccaggagaggagagaaaaagaatgtctctcttgtcccctctcag
tttactcaaaccgatgtatcggatattaagggcaagacctcaatcttctcaaatatgata
ttttattttgttaacctgcctcggtcccattcgcttgatactttccacaaaatggtggtt
gagaatggagggaagttctcaatgaacttaaacaattcagtgactcattgcattgcagcg
gaaagcagtggaataaagtatcaggcatcaaagcgtcagcgagatgtcatccacttttca
tggttcttagattgttgttcacgaaataatctgctgcctttgcagccaaagtacttcctc
catctcactgatgcttcaaggaccaaattacaggatgaaattgatgaattttccgattct
tatttctgggatttagaccttgaaggtctcaaacaggtcttaagcaatgccaagcaatca
gaagactcaaaatccattgaatactacaagaaaaagttatgtccagagaaaagatggtcc
tgcttcttcggctgctgcatttactttcacccgtatagtcaaacattgagcactgaagaa
gaagccctgttgggaattatggctaagagattagcgcttgaagtcttaatgagtggtggt
aaagttagcaataatcttactcatgcgtcacaccttgtagtccttgctatagcagaagac
tctttggattttacttcagtttcaaaaagtagtttcagcgaaatggagaaacgtcgtttg
ttgaagagagggctgcatgttgttagcgcgcactggttagaggatagcttgcaaagagag
caaaaactgtgtgaggacgtctacactctgaggccaaagcatatggaagagtctgatact
gaagaatcagataattccgaacatgatacaacggaggaagcttcctgtggtaatgctcaa
accgaagagccagcttcctctaaaacggttagaggacggtcaaatgctcgagctagtagt
aaaaggggaaggtcttctacaaactcactgcaacgagtacagagacgcagaggcaagcag
ccttctaagataggcggagatgaaactgaggagggtgatacttctgaagaaaaggtttca
acaagactcagtgatatagcagaaggcacagattcgttaggtgaggctcaaagaaactct
aggagaggaaaatctgcaaagagaggaaagtctcgtgtgggacaaacccagagagtacag
agatcacgaagaggcaagaagccttcgaagatagggggagatgagtctgaggaagatgat
gattttgatgacagaaaacatgagtatgcagaagcggaagagagtaatgcagctggtaga
tcagtggaagacaacaatgaagaaacccgagagcctgacgtagcaaagtacacagaatca
ctgcaaagagacaacacagtagcagttgaagaggcctcacaagattctagaaatgcaaat
actgagatggatacgaaggagaagctacaaatgcacgaggatccagtacaagctatgttg
atggacatgataccgagcctcagtctgaaaaacacagagacgtcaaaccgaaccaccggg
gaaagtagtagattggctaatgtttctggtgaatgcgagtcttcagagaaaagaaaactc
gacggcgagactgatgctacttctgtgaacgcagaggaagatgcagacgcaattcctcct
cctgtaaagaaaaagaaagtcagctaccgagatattgcaggagacttgcttaaagactgg
taa
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integrated database retrieval system
