Euzebya pacifica: DVS28_a3662
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Entry
DVS28_a3662 CDS
T05999
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
euz
Euzebya pacifica
Pathway
euz03030
DNA replication
euz03410
Base excision repair
euz03420
Nucleotide excision repair
euz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
euz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
DVS28_a3662
03410 Base excision repair
DVS28_a3662
03420 Nucleotide excision repair
DVS28_a3662
03430 Mismatch repair
DVS28_a3662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
euz03032
]
DVS28_a3662
03400 DNA repair and recombination proteins [BR:
euz03400
]
DVS28_a3662
Enzymes [BR:
euz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
DVS28_a3662
DNA replication proteins [BR:
euz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
DVS28_a3662
DNA repair and recombination proteins [BR:
euz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
DVS28_a3662
NER (nucleotide excision repair)
GGR (global genome repair) factors
DVS28_a3662
MMR (mismatch excision repair)
DNA ligase
DVS28_a3662
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
DVS28_a3662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
HHH_5
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
DUF7501
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
AXV08335
UniProt:
A0A346Y1I8
LinkDB
All DBs
Position
complement(4205274..4207298)
Genome browser
AA seq
674 aa
AA seq
DB search
MTDRETRDRVAELRETLAYHRYRYYVLSDPQIPDAEFDALMRELEGLEAEHPELDHPDSP
THQVGAPIDSAFGEVAHRLPMQSLDNAFDREELQAWADRVARGLEGGDHRFTCELKVDGV
AISLIYENGFLTQAITRGDGTTGEDVTANVRTIEGIPRLLAIDDPPALVEVRGEIHYPVE
KFEAMNAAREAAGEARFANPRNAASGALRQKDPEVTRTRPLALVAHGMGATDGLDVESHS
GFLAFLRDAGVPTAPETRTVDDIGAVWAFVEHWETHRHDPTYELDGVVVKVDRLDQQRQL
GSTSRAPRWAIAFKYPPEEQRTRLVDIEVNVGRTGRTTPYAVLEPVLVAGSTVTYATLHN
QDQARLKDVRPGDMVIVRKAGDVIPEVVGPVLSERPEDVEAAGPWQFPTTCPFCGEPLQR
LEGEADTYCVNVDCPNRILETLDHFASRKAMDIEGLGYETAKALLEAGLVSDLADLYLLD
RDAVFALEGFGDKKTDLLLDGIQKSRTQPIERLLTGLNIRHIGPNVAKLIARSLGDLQAM
RDADVERIAAIDGVGTVIADSLVTWMGNDRNAALLDKLVAAGVRTDTEVTATTSDVLAGR
TLVITGTLAGYSRDEAKQAVLDAGGKVTGSVSGKTFAVVVGDSPGSKAAKAEDLGVPILD
EAGFEQLLATGELP
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgactgaccgcgagacccgcgaccgggtggccgagctgcgcgagaccctcgcctaccac
cgctaccggtactacgtcctttccgacccgcagatccccgacgcggagttcgacgcgctc
atgcgcgagctcgaggggctcgaggccgagcaccccgagctcgaccatccggactccccg
acccatcaggtcggcgcgcccatcgacagcgcgttcggcgaggtcgcccaccgcctgccg
atgcagtcgctggacaacgccttcgaccgcgaggagctgcaggcctgggccgaccgggtt
gcccggggcctggagggcggcgaccaccgcttcacttgcgagctgaaggtcgacggggtg
gccatctcgttgatctacgagaacgggttcctcacccaggccatcacccgcggtgacggc
accaccggcgaggacgtcaccgcgaacgtccgcaccatcgagggcatcccacggctgctc
gccatcgacgacccgccggcgctggtggaggtccgcggcgagatccactacccggtggag
aagttcgaggccatgaacgccgcccgcgaggccgccggcgaggcgcggttcgccaaccct
cgcaacgccgcctcgggcgcgctgcgccagaaggaccccgaggtcacgcggacccggccg
ctcgcgctcgtcgcccacggcatgggcgccaccgacgggctggacgtcgagagccattcc
ggtttcctcgccttccttcgcgatgccggcgtcccgaccgcgcccgagacccgcaccgtc
gacgacatcggcgcggtctgggccttcgtcgagcactgggagacccaccgccacgacccc
acctacgagctggacggcgtcgtggtcaaggtcgaccggctggaccagcaacgccagctc
ggctcgaccagccgtgctccccgctgggccatcgcgttcaagtacccgccggaggagcag
cggacccgcctggtcgacatcgaggtcaacgtcggacggaccggacggacgaccccctac
gccgtcctcgaaccggtgctcgtcgctgggtccacggtgacctacgccaccctgcacaac
caggaccaggcccggctgaaggacgtccgcccgggggacatggtcatcgtgcgcaaggcc
ggtgacgtcatccccgaggtggtcggcccggtgctgtcggaacgccccgaggacgtcgag
gccgccggtccctggcagttccccacgacctgcccgttctgcggcgagccgctgcaacgg
ctcgagggcgaggccgacacctactgcgtcaacgtcgactgccccaaccggatcctcgag
acgctcgaccacttcgccagccgcaaggccatggacatcgaggggttgggctacgagacc
gccaaggccctgctggaggccgggctggtcagcgacctggccgacctgtacctgctggac
cgcgacgccgtgttcgccctcgagggcttcggggacaagaagaccgacctgctgctcgac
ggcatccagaagtccaggacccagcccatcgaacggctgctgacgggcctgaacatccgg
cacatcggtccgaacgtcgccaagctgatcgcccgttccctcggtgacctgcaggccatg
cgcgacgccgacgtcgagcggatcgccgcgatcgacggggtcggaacggtcatcgccgac
tcgctggtcacctggatgggcaacgaccgcaacgccgcgctgctggacaagctcgtggcc
gccggcgtccgcaccgacaccgaggtgacggcgacgaccagcgacgtcctcgcgggccgc
acgctggtcatcaccgggacgctggccggctactcccgcgacgaggccaagcaggcggtc
ctcgacgccggcggcaaggtcaccggcagcgtgtccggcaagacgttcgccgtcgtcgtc
ggtgacagccccgggtcgaaggcagccaaggccgaggacctcggcgtgccgatcctcgac
gaggccgggttcgagcagctgctggccaccggcgagctgccctga
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