Echinicola vietnamensis: Echvi_3957
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Entry
Echvi_3957 CDS
T02388
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
evi
Echinicola vietnamensis
Pathway
evi03030
DNA replication
evi03410
Base excision repair
evi03420
Nucleotide excision repair
evi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
evi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Echvi_3957
03410 Base excision repair
Echvi_3957
03420 Nucleotide excision repair
Echvi_3957
03430 Mismatch repair
Echvi_3957
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
evi03032
]
Echvi_3957
03400 DNA repair and recombination proteins [BR:
evi03400
]
Echvi_3957
Enzymes [BR:
evi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Echvi_3957
DNA replication proteins [BR:
evi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Echvi_3957
DNA repair and recombination proteins [BR:
evi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Echvi_3957
NER (nucleotide excision repair)
GGR (global genome repair) factors
Echvi_3957
MMR (mismatch excision repair)
DNA ligase
Echvi_3957
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Echvi_3957
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
HHH
Auto_anti-p27
GT4-conflict
Zn_ribbon_NUD
PTCB-BRCT
5_3_exonuc
Motif
Other DBs
NCBI-ProteinID:
AGA80167
UniProt:
L0G3R6
LinkDB
All DBs
Position
4741768..4744230
Genome browser
AA seq
820 aa
AA seq
DB search
MSTIPKPEAQKRIAELTATINHHNQLYYQKDQSEISDFEFDKLLEELMLLEEQFPEFQDK
NSPTQHVGGTITKEFETVEHETRMLSLGNTYSKEELIAFDERVAKGLGHRQYSYCCELKF
DGVAISLVYEKGELVRAVTRGDGYRGDNVTANVKTIKNIPLYLQGDDVPDKFEIRGEIFL
PVKEFEKINTEREANGEALLANPRNTASGTLKMQDSSIVAKRRLNCYFYQLLGDQIGVDQ
HDQAMDRLEKWGFNISPTYKKCTDINAVFEYIESWREKRHSLPLETDGVVLKVNDYAQRE
ELGFTAKIPRWAIAYKYKAESAESTLMSVTYQVGRTGAITPVANLSPVLLAGTTVKRASL
HNANEIMRLDLHHGDVVFVEKGGEIIPKITAVAVEKRKADAKPIAYITHCPECGTPLERK
EGEAKHFCPNTASCPPQVLGRIEHFVHKRAMDIDSMGTERIRALINQGYIEHPADLYELE
AKKDQLLGLEINAEQYEKSSDGYLYVTLRKALFAITDGISLSAIDRYLSDTEALEQHQKL
AQFPDFIQQQNKKVALNLAALDKLKDTLSDLPHDQIEDFLPVSAVMAMFVGNQCSMEKLQ
LLSQQKNTVHDIVLTFDFELHQDQEDKIKKLKGNTFQEGVISNMLAGIQASKNQPFEKVL
FALGIRNIGENTAQLLARHFKTIENLTQASTEQLLDINGVGETLVGSIREFFSQEENKQN
IQRLKAHGLHFEIKAEDLPEQKGNALEGLKVLASGKFEHFKRDEIIEAISAHGGTYLKSV
SKNLDLIIEGADMGPSKKEKAQKLGIKMISENEFLSMIAD
NT seq
2463 nt
NT seq
+upstream
nt +downstream
nt
atgagcaccattccaaaacctgaagcccaaaaaagaattgctgagctaacagctaccatt
aaccaccataaccagctgtactatcagaaagatcaaagtgagatcagtgactttgaattt
gacaagttgctggaagagttgatgctactggaagaacagtttccagagtttcaggataaa
aacagtcctacccagcatgtcggcggcaccatcaccaaggaattcgaaaccgtggaacat
gaaacccggatgctgtccttgggaaatacctacagcaaagaggagctcattgcctttgat
gagcgtgtggccaaaggcttgggacatcgccaatatagttattgctgtgaactgaaattt
gatggcgtggccatcagtttggtttatgaaaaaggcgaactggtcagggcggtcacgcgt
ggagatggctaccggggcgataatgtcacggccaatgtaaaaaccatcaagaacattcca
ctttacctgcaaggcgatgatgttccggacaaatttgaaatccgtggtgagattttcctt
cccgtcaaggaatttgaaaagatcaataccgaaagggaggccaatggcgaagcgcttttg
gccaatcctagaaacacggcgtcaggcaccttaaagatgcaggacagcagtattgtcgcc
aaaaggcgcctaaactgttacttttatcagcttctgggcgatcaaatcggagtggaccag
catgatcaagccatggaccgcttggaaaaatggggatttaacatctctcctacctataaa
aaatgtacggatatcaatgccgtattcgaatacatagaatcatggcgggaaaagcgccac
agcttgccactggaaacggacggtgtagtgcttaaggtaaacgattatgcccagcgcgaa
gaacttggcttcaccgctaaaatcccccgttgggcgatcgcctataagtataaagcagaa
agtgcggaaagtacgctcatgtccgtcacttaccaagtgggcagaacgggagccatcact
cccgtggccaatctttcccctgtcttgcttgcaggcaccaccgttaagcgtgcttccctg
cacaatgccaatgaaatcatgcgactggacctgcaccacggtgacgtggtctttgtggag
aaaggcggagagatcattcctaaaataaccgccgtggcggtagaaaaaaggaaagctgat
gccaagcccatcgcttacatcacccactgcccggaatgtggcacaccactggaaaggaaa
gaaggtgaagccaaacatttctgtccaaatactgcatcctgtccaccacaagtacttggc
cggatagagcactttgtgcataagcgcgccatggatattgacagtatgggaaccgagcga
ataagggccttgatcaatcaaggatacatagagcatcctgccgacctgtacgaactggaa
gctaaaaaagaccagctgctaggcttggagatcaatgccgagcaatatgaaaaaagcagc
gacggatatttatatgtcaccttgcgaaaggcgctctttgcgatcactgatggcatttca
ctttcagccatcgaccggtacctatcggacaccgaagcactggagcagcatcagaagctg
gcgcaattccctgatttcatccagcagcaaaacaaaaaagtagccttaaacctggctgcg
cttgacaagctgaaggacaccttgagcgaccttccccatgaccaaatcgaagatttcttg
cccgtttcggcggtgatggccatgtttgtagggaatcaatgctccatggaaaagctgcag
ctcctgagccaacaaaagaacacggtgcatgatatcgtattgacctttgattttgaactg
catcaggatcaagaagataaaatcaaaaaactgaaaggcaacaccttccaggaaggtgtc
atttccaatatgctcgctggaatccaagcctccaaaaaccaacctttcgaaaaggtgctt
tttgccttgggcattagaaatatcggagaaaataccgcccaactcttggcgaggcatttt
aagaccattgaaaaccttactcaagcgagcaccgaacagctactggacatcaacggtgtt
ggggagacattggtcggtagcattcgggagttcttttcacaagaagaaaacaagcaaaat
atccagcggctaaaagcccatgggctacattttgaaatcaaagcagaagatctcccagag
caaaagggcaatgccttggaaggcctgaaagtgctggcctcgggaaaatttgaacatttc
aaacgtgacgagatcatagaggccatttctgcccacgggggcacctacctaaaatccgtt
tctaaaaaccttgacctgatcattgaaggagcagacatggggcccagtaaaaaagaaaaa
gcgcaaaaactcggcatcaagatgatttctgaaaatgaattcttaagcatgatcgcggat
taa
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