Enterobacter hormaechei subsp. xiangfangensis: BFV63_15600
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Entry
BFV63_15600 CDS
T04821
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
exf
Enterobacter hormaechei subsp. xiangfangensis
Pathway
exf03030
DNA replication
exf03410
Base excision repair
exf03420
Nucleotide excision repair
exf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
exf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
BFV63_15600 (ligA)
03410 Base excision repair
BFV63_15600 (ligA)
03420 Nucleotide excision repair
BFV63_15600 (ligA)
03430 Mismatch repair
BFV63_15600 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
exf03032
]
BFV63_15600 (ligA)
03400 DNA repair and recombination proteins [BR:
exf03400
]
BFV63_15600 (ligA)
Enzymes [BR:
exf01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
BFV63_15600 (ligA)
DNA replication proteins [BR:
exf03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
BFV63_15600 (ligA)
DNA repair and recombination proteins [BR:
exf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
BFV63_15600 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
BFV63_15600 (ligA)
MMR (mismatch excision repair)
DNA ligase
BFV63_15600 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
BFV63_15600 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
HHH
DUF2229
Motif
Other DBs
NCBI-ProteinID:
AOP92246
LinkDB
All DBs
Position
complement(3264904..3266919)
Genome browser
AA seq
671 aa
AA seq
DB search
MDSIEQQLTELRTTLRHHEYLYHVMDAPEVPDAEYDRLMRELRELEAQHPELITPDSPTQ
RVGAKPLGAFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSVDNLSWCCELKLDGLA
VSILYENGVMVRAATRGDGTTGEDITTNVRTIRAIPLKLRGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDTRITAKRPLTFFCYGVGILEGGDLPDTHL
GRLMQFKEWGLPVSNRVQLCDSPEAVLAFYHKVEEDRPTLGFDIDGVVIKVNSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVQVAGVLVSNATLHN
ADEIARLGLRIGDKVVIRRAGDVIPQVVNVVESERPADTRAIEFPAHCPVCGSDVERVEG
EAVTRCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFTLTAG
KLTGLDRMGPKSAQNIVNALEAAKNTTFARFLYALGIREVGEATAAGLAAYFGTLDALEK
ATIDELQKVPDVGIVVATHVFNFFAEESNREVIGKLLEQGIHWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLVALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIEII
DEAEMMRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggactcaatcgaacaacaacttactgaactgcgaaccacacttcgccatcatgaatat
ctctatcatgttatggacgcaccggaagtgccggatgcggagtatgaccgcctgatgcgt
gaactgcgcgagctggaagcgcagcaccccgaactgattacgcccgattctccaacgcag
cgcgtcggtgcgaaaccgctgggcgctttcagccaggtgcgccacgaagtgccgatgctg
tcgctggataacgtgtttgatgaagagagttttctggctttcaacaagcgcgtgcaggat
cgcctgaagagcgtcgacaatctgagctggtgctgcgagctaaagctggatggtctggcc
gtcagtattctttatgagaacggcgtgatggtgcgtgccgcaacgcgcggcgacggcact
accggggaagacatcaccaccaatgtgcgcactattcgtgcgatcccgctgaaactgcgt
ggcgataacattcccgcccggctggaagtgcgcggggaagtgttccttccgcaggcgggc
ttcgagaagatcaacgaagaagcgcgccgtaccggcgggaaagtgtttgctaacccgcgt
aacgcggcggcaggttcgctgcgtcagctcgatacgcgtatcaccgcgaagcgaccgctt
actttcttctgctacggcgtcgggatcctggaaggcggtgacctgccagatacccacctg
gggcgtttaatgcagttcaaagagtggggattaccggtaagcaaccgcgtgcagctctgc
gactctccggaggcggtgctggcgttctatcacaaggttgaagaggatcgtcccacgctc
gggtttgatattgacggcgtggtgatcaaggttaattcgctggcgttgcaggaacagttg
ggatttgtggcacgtgcgccacgctgggcggtggcctttaagtttccggcgcaagagcag
atgaccttcgttcgcgacgtggagtttcaggtcggacgtacgggggccattacgcctgtg
gcgcgtctggagcctgtgcaggtggctggcgtgctggtaagtaacgccacgctgcataac
gccgatgaaattgcgcgtctggggctgcgaattggtgacaaagtggtgattcgccgcgcg
ggtgatgtgatcccacaggtggttaacgttgtggagtctgaacgtcctgccgacacccgt
gccatcgagtttccagcccactgtccggtatgtggttctgacgttgagcgcgtggaaggt
gaagcggtaacgcgctgtacgggcgggttaatctgcggcgcgcagcgtaaagagtccctg
aagcacttcgtctcccgccgggcgatggacgtggacggaatgggtgacaagattatcgac
cagttagttgagaaagagtacgtccatacgcctgcggacctctttaccctgacggcaggt
aagctgaccggtcttgatcgtatgggaccgaaatctgcccagaacattgttaacgcgctc
gaggcggccaaaaacaccacctttgcccgtttcctttacgcgctcggcattcgtgaagtc
ggagaggcgacggcggcagggctggcggcgtatttcggcacgctggacgcgctggagaaa
gccaccatcgacgagctacagaaagtccctgatgtcggcattgtggtcgccacccacgtt
ttcaacttcttcgccgaagagagcaaccgtgaagtgatcggtaaattactggaacagggc
attcactggcccgcaccggtagtggttaatgccgaagagatcgacagtccgtttgccggt
aaaacggtggtgctgaccggcagcctgagtcagctttcacgcgatgacgcgaaagcgcgc
ctggtggcgctgggggcaaaagtggcgggcagcgtatcgaagaaaaccgacctggtgatt
gccggggaagcggccggttcgaagctggcaaaagcgcaggagcttggcatcgagataatc
gacgaagcggaaatgatgcgcctgttaggagagtga
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integrated database retrieval system
