Filifactor alocis: HMPREF0389_00481
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Entry
HMPREF0389_00481 CDS
T01663
Symbol
ligA
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
faa
Filifactor alocis
Pathway
faa03030
DNA replication
faa03410
Base excision repair
faa03420
Nucleotide excision repair
faa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
faa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
HMPREF0389_00481 (ligA)
03410 Base excision repair
HMPREF0389_00481 (ligA)
03420 Nucleotide excision repair
HMPREF0389_00481 (ligA)
03430 Mismatch repair
HMPREF0389_00481 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
faa03032
]
HMPREF0389_00481 (ligA)
03400 DNA repair and recombination proteins [BR:
faa03400
]
HMPREF0389_00481 (ligA)
Enzymes [BR:
faa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
HMPREF0389_00481 (ligA)
DNA replication proteins [BR:
faa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
HMPREF0389_00481 (ligA)
DNA repair and recombination proteins [BR:
faa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
HMPREF0389_00481 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
HMPREF0389_00481 (ligA)
MMR (mismatch excision repair)
DNA ligase
HMPREF0389_00481 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
HMPREF0389_00481 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
BRCT_2
HHH
Zn_ribbon_NUD
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
EFE28565
UniProt:
D6GSC4
LinkDB
All DBs
Position
175622..177628
Genome browser
AA seq
668 aa
AA seq
DB search
MDAEKKIKLLRERLEYYSAKYYQEDAPEISDAEYDSMMKELMSLEKEHPSLRSAESPSEK
VGGSYSKKFAEYVHRVPLLSLSNAFSYEELLEFDQKIRERCGDISYCVELKIDGLSVALE
YKKGKFIHGATRGNGQQGENVTDNLNEIVTIPKELNQKVDLVVRGEVFLPKDRFLKLNEQ
QEDLGLPLFANPRNAASGSLRQLDSNITKDRNLDIFIFNVQEWMDNSDKEKEQELNSHSK
QLNYLDDLGFKTISPREHCESMEKVIEFIKYWTEHREELLFDIDGIVIKVDELNKREILG
QTAKAPRWAIAYKFPAEQKETTIEAITVQVGRTGVLTPIAELTPVLISGSTVSRATLHNE
DYIAMKDIRVGDRVIVQKAGEIIPEVHAVMKDKRDGTEVVFHMPHTCPSCGAATQKIDGE
VAVKCTNFACPAQLKRRMIHFVSKSAMDIDNFGPSIVSSLYENGLIKNIADIYLLKEKDL
LQLNGFAKKSASNLISSINHSKSRNLNQLLVALGIDFVGEKAAKVLSKNFSSLEELEKAN
LDDLMRIEEIGLKTAQSILNYFQLEENRAVLERLVEYGVNTKSISGTDQNSSKVFSGKKF
VLTGTLEGMKRSEAKKIIETCGGEVMSAVSTSVDYLLAGDSPGSKLKKAQELNIPILTKD
EFLVMVNE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggatgctgaaaaaaaaataaagttacttagggaacgcttggaatactattctgctaaa
tactatcaggaggatgcaccggaaattagtgatgcagaatatgatagtatgatgaaagag
ttgatgtctttagaaaaagagcacccttctttaaggtcggcagagtctccaagtgaaaaa
gttgggggaagttattctaagaagtttgcagagtatgttcatagagtgccgttgttgtcg
ttatcaaatgctttttcttatgaagaactgcttgaatttgatcagaaaataagagagcgt
tgtggagatatctcatattgtgtagaattaaaaattgacggattgtctgttgccttagag
tataagaaaggaaaatttattcatggcgctacaagaggaaacggacagcagggagagaat
gtgaccgataacttaaatgaaatcgttacaattccaaaagaattgaatcagaaagttgat
ttggtagtcagaggagaagtttttcttccgaaagatcgttttttaaagttaaatgaacag
caagaagacttagggttacctctatttgcaaatcccagaaatgccgcttccggttctttg
agacaattggattcgaatattacaaaagacagaaatttagatatttttatttttaatgtt
caagagtggatggacaactctgataaagaaaaagaacaggaactaaactctcattccaag
cagttaaactacctggatgatttaggatttaaaacaatatctcccagagaacattgtgag
tctatggaaaaagtaattgaatttatcaagtattggacggaacatagagaagaattgttg
tttgatatcgatgggattgttataaaagttgacgagttaaataagagagaaatcttaggg
cagactgcaaaagctccacggtgggcgattgcatataaatttcccgctgaacaaaaagag
actacaatagaagcaattacggtccaagtaggaagaacaggagttttgacacctattgcc
gagttgacaccggttttgatttcaggctctacagtatcaagagcgaccttgcacaatgag
gactatattgcaatgaaagatattcgtgtaggagatagggtcattgttcaaaaagcaggt
gaaattataccggaagtacatgctgttatgaaagataaaagagatggaacagaagttgtt
tttcatatgccgcatacatgcccttcgtgtggtgctgcaactcaaaaaattgatggagaa
gttgccgttaaatgtactaattttgcctgtccggcacagttaaaacgtagaatgattcat
tttgtttcaaagagtgcaatggatattgataattttggtccgagtattgtatcttccctt
tatgaaaatggtttgattaaaaatatagcggacatctatttgttgaaagaaaaggatttg
ttacaactaaacggttttgcaaagaagtctgcgtccaatttaatttcgtccattaatcat
tccaaatcaagaaatttaaatcaattattggtagcattagggattgattttgtgggagaa
aaagcagctaaggtgctaagtaaaaatttttcttcgcttgaagaactggaaaaagcaaat
ttagatgatttgatgagaatagaagaaattggattgaagacagcacagagtattttgaac
tattttcaactggaggaaaatagagctgttcttgagagattggtagaatatggtgttaat
acaaaatcaatttccggtacggaccaaaacagttcaaaagtattttccggaaagaaattt
gttctgacgggaacattagagggaatgaaacgctctgaagcaaaaaaaataatagaaact
tgtggtggagaagtgatgtcggctgtcagtacatctgttgattatttgttggcaggagac
agtccgggaagtaaattaaaaaaggctcaggaattgaatattccaatcttgacgaaagat
gaattcttggttatggtaaatgaataa
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