KEGG   Ficedula albicollis (collared flycatcher): 101811651
Entry
101811651         CDS       T02815                                 
Symbol
SMNDC1
Name
(RefSeq) survival motor neuron domain containing 1
  KO
K12839  survival of motor neuron-related-splicing factor 30
Organism
fab  Ficedula albicollis (collared flycatcher)
Pathway
fab03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:fab00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    101811651 (SMNDC1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:fab03041]
    101811651 (SMNDC1)
Spliceosome [BR:fab03041]
 Complex A
  U2 snRNP components
   U2 related factors
    101811651 (SMNDC1)
 Complex B
    101811651 (SMNDC1)
 Other splicing related proteins
  Proteins involved in snRNP biogenesis
   Other proteins involved in snRNP biogenesis
    101811651 (SMNDC1)
SSDB
Motif
Pfam: SMN_Tudor TUDOR DUF2067 TraX-like
Other DBs
NCBI-GeneID: 101811651
NCBI-ProteinID: XP_005048852
UniProt: A0A803V2I9
LinkDB
Position
6:complement(26734367..26744141)
AA seq 238 aa
MSEDLAKQLASYKAQLQQVEAALSGNADNEDLLKLKKDLQEVIELTKDLLSTQPSETLAS
SDSSASALPSHSWKVGDRCMAIWSEDGQCYEAEIEEIDEENGTAAVTFAGYGNAEVTPLF
NLKPVEEGRKAKEDSGNKPMSKKEMIAQQREYKKKKALKKAQRIKELEQEREDQKVKWQQ
FNNRAYSKNKKGQVKRSIFASPESVTGKVGVGTCGIADKPMTQYQDTSKYNVRHLMPQ
NT seq 717 nt   +upstreamnt  +downstreamnt
atgtcagaagaccttgctaagcagttggccagctacaaagctcagctccagcaagtagag
gctgccttatctggcaatgcggacaatgaggacttactgaaactgaagaaagacttacag
gaagtcatagagttaaccaaagatctcctttcaacacaaccttcggaaactcttgcaagt
tctgacagttctgcctccgccctgcccagtcactcatggaaggttggggataggtgtatg
gccatatggagtgaggatggacagtgttacgaagctgagattgaggaaatagatgaggag
aacggaacagctgcggttacatttgctggatatggcaatgctgaagtcacacctctgttc
aacctgaagcctgtggaagagggaaggaaagcaaaagaggacagtggcaacaaacccatg
tccaaaaaagagatgatagcccagcaacgagagtataaaaagaagaaagctttgaaaaaa
gctcagagaattaaagaacttgaacaggaaagagaagaccagaaagtcaagtggcaacag
tttaacaacagagcctattctaaaaacaaaaaaggccaggtgaaaaggagtatttttgct
tctcctgagagtgtaactggcaaggttggcgttggaacgtgtggaattgcagacaaacct
atgacacagtatcaagatacctctaaatataatgtcaggcatctgatgcctcagtaa

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