Ficedula albicollis (collared flycatcher): 101817601
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Entry
101817601 CDS
T02815
Symbol
TRAF6
Name
(RefSeq) TNF receptor associated factor 6
KO
K03175
TNF receptor-associated factor 6 [EC:
2.3.2.27
]
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04010
MAPK signaling pathway
fab04120
Ubiquitin mediated proteolysis
fab04140
Autophagy - animal
fab04144
Endocytosis
fab04620
Toll-like receptor signaling pathway
fab04621
NOD-like receptor signaling pathway
fab04622
RIG-I-like receptor signaling pathway
fab05132
Salmonella infection
fab05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
101817601 (TRAF6)
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
101817601 (TRAF6)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
101817601 (TRAF6)
04140 Autophagy - animal
101817601 (TRAF6)
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
101817601 (TRAF6)
04621 NOD-like receptor signaling pathway
101817601 (TRAF6)
04622 RIG-I-like receptor signaling pathway
101817601 (TRAF6)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
101817601 (TRAF6)
09171 Infectious disease: bacterial
05132 Salmonella infection
101817601 (TRAF6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fab04131
]
101817601 (TRAF6)
04121 Ubiquitin system [BR:
fab04121
]
101817601 (TRAF6)
Enzymes [BR:
fab01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
101817601 (TRAF6)
Membrane trafficking [BR:
fab04131
]
Endocytosis
Clathrin-mediated endocytosis
Ubiquitin E3 ligases
101817601 (TRAF6)
Ubiquitin system [BR:
fab04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
101817601 (TRAF6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
TRAF6_Z2
zf-C3HC4_2
zf-C3HC4
zf-RING_UBOX
zf-RING_2
zf-C3HC4_3
zf-TRAF_2
zf-C3HC4_4
zf-RING_5
SlyX
PspA_IM30
Med21
RING_XB3-XBAT31
TRAF3_RING
Sina_ZnF
zf-RING_11
DUF4455
DUF16
HAP1_N
CEP104_ZnF
CENP-F_leu_zip
U-box
ATG16
Spc29
Myosin_tail_1
UPF0242
DUF1664
HMMR_N
PUMA_CC
ADIP
DM
Motif
Other DBs
NCBI-GeneID:
101817601
NCBI-ProteinID:
XP_005046986
LinkDB
All DBs
Position
5:complement(19782713..19797209)
Genome browser
AA seq
548 aa
AA seq
DB search
MSLLQSDSGCGARAGDSGCCAAMASAGGAAAKEESCGGGGAGSGCGAAGGSCGDETQGYD
VEFDPPLESKYECPICLMALREAVQTPCGHRFCKGCIVKSIRDAGHKCPVDNEILLENQL
FPDNFAKREILSLMVKCPNKGCSMKMELRHLEDHQLQCDFSTVECPQCQGAFPKNYLKEH
MTQECPRRQVCCPNCATSMAYENKELHDQTCPLANVYCEYCNTVLIREQMPNHYDNDCPT
APVPCFYSAFGCPEKMQRNELARHMQEFTQVHMRMMAQSFQNISVTAANPVPFINGLPFE
PALFSHVSHAAYDCNPEVENFKETIQQLEGRLVRQDHQIRELIAKMETQNTHMAELKRTI
RSLEGKITEMEAQQCNGIYIWKIENFSGLQKAQEEERPVVMHSPGFYTGRPGYKLCLRLH
IQLPNAQRCANFISLFVHTMQGEYDSHLPWPFQGTIRLSILDQSEGPERQNHEEVMEAKP
ELLAFQRPTIHRNPKGFGYVTFMHLQTLKQRTFVKDDTLLVRCEVLTRLDLNSVRREGFQ
PRSTDGAM
NT seq
1647 nt
NT seq
+upstream
nt +downstream
nt
atgagcctgctgcagagcgacagcggctgcggagcccgcgccggggacagcggctgctgc
gccgccatggccagcgccggcggcgccgcggccaaggaggagagctgcggcgggggcggc
gcgggcagcggctgcggcgccgcgggcggctcctgcggcgacgagacgcagggctacgac
gtggagttcgacccgcccctggagagcaagtacgagtgccccatctgcctgatggcgctc
cgggaagccgtgcagaccccctgcggccaccgcttctgcaaaggctgcattgtcaaatct
atcagagatgcaggtcacaaatgtcctgtagacaatgaaattctgcttgaaaatcaactt
tttcctgacaacttcgccaaacgggaaatcctttcattaatggtcaagtgtcccaacaag
ggctgcagcatgaagatggagctcaggcacttagaggaccaccagttgcagtgtgatttt
tccactgtggaatgcccacagtgccaaggagctttcccaaagaactatctgaaggagcac
atgacccaagagtgtccaaggcgccaagtgtgttgcccaaactgtgccacatctatggcc
tatgaaaataaagagcttcatgaccaaacctgcccacttgccaatgtatattgtgaatat
tgcaacacggtgctcatcagagagcagatgcctaaccattatgacaatgactgtcctact
gccccagtgccatgtttttacagtgcctttgggtgtcctgaaaagatgcaaaggaatgaa
ctggcacgacacatgcaggagttcactcaggttcacatgaggatgatggctcagagtttc
cagaatatcagtgttactgctgcaaatcctgtacccttcatcaatggcctaccctttgag
cctgctctcttctcacacgtgtcacatgctgcatatgactgcaatccagaagttgaaaac
ttcaaggaaactattcagcagttggaaggtcgtctggtaagacaagatcaccaaatcagg
gaactcattgctaaaatggagactcagaacactcacatggcagaactcaagcgtactatc
cgaagtttggagggaaagattaccgaaatggaggcacagcaatgcaatggtatttatatc
tggaagattgagaacttcagtgggctgcagaaagcccaggaagaagagagacccgtagtg
atgcacagtcctggcttctatacagggaggcctggctacaagctgtgcttgcgcctgcat
atccagttaccaaacgctcagcgctgcgctaattttatctctctgtttgtccacaccatg
caaggggaatatgacagccacctgccctggcctttccaaggcaccatacgactttctatt
ttggatcaatcagaaggcccagaaaggcagaaccacgaagaggtgatggaagccaagcca
gagctgctggccttccagagaccgacaatccaccgcaatcccaaaggttttggttacgtg
actttcatgcacctgcagaccttgaaacagagaaccttcgtcaaggatgacacgctcctg
gtgcgctgcgaggtgctgacgcgcctggacttgaacagcgtccgcagagaagggttccag
ccccgcagcaccgacggagccatgtag
DBGET
integrated database retrieval system
