Ficedula albicollis (collared flycatcher): 101818592
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Entry
101818592 CDS
T02815
Symbol
THBS1
Name
(RefSeq) thrombospondin 1
KO
K16857
thrombospondin 1
Organism
fab
Ficedula albicollis (collared flycatcher)
Pathway
fab04115
p53 signaling pathway
fab04145
Phagosome
fab04148
Efferocytosis
fab04350
TGF-beta signaling pathway
fab04510
Focal adhesion
fab04512
ECM-receptor interaction
fab04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
fab00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
101818592 (THBS1)
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101818592 (THBS1)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
101818592 (THBS1)
04148 Efferocytosis
101818592 (THBS1)
09143 Cell growth and death
04115 p53 signaling pathway
101818592 (THBS1)
09144 Cellular community - eukaryotes
04510 Focal adhesion
101818592 (THBS1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
101818592 (THBS1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
fab04131
]
101818592 (THBS1)
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
fab00536
]
101818592 (THBS1)
Membrane trafficking [BR:
fab04131
]
Endocytosis
Phagocytosis
Opsonins
101818592 (THBS1)
Glycosaminoglycan binding proteins [BR:
fab00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101818592 (THBS1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
TSP_1
TSP1_spondin
VWC
TSP1_CFP_C
VWC2L_2nd
EGF_3
cEGF
TSP1_ADAMTS
TSP1_CCN
Laminin_G_3
EGF
Laminin_G_2
Motif
Other DBs
NCBI-GeneID:
101818592
NCBI-ProteinID:
XP_005047279
UniProt:
U3JS61
LinkDB
All DBs
Position
5:complement(31354134..31370655)
Genome browser
AA seq
1177 aa
AA seq
DB search
MGPAAALCLLLLVLGGSETKRTAESRNDDNSVFDLFELIGFMRKGAGRRAPGVYLVKGPE
SSSPAYRIEDASRIPAVPDSKFQDLLDAIHAEKGFILLATLRQAKKSRGTLLSVEQKDGS
GHVFSLVSNGKAGSLDLSLSVDGKQQLVSVEDVLLATGHWKNITLFVQEDRAQLYVGCEK
MENAELDIPIQNIFTRDLASSARLRIAKGGVNDNFQGLLQNVRFVFGTTLETILRNKGCS
SSTSAIITLDNPINGSSPAIRTNYIGHKTKDIQAVCGFSCDELTNMFVELQGLRSMVTTL
QDRVRKVTEENEIIAKVVQITPGACIHNGVLHKNKEEWTIDSCTECTCQNSATICRKVSC
PLMPCSNATVPDGECCPRCWPSDYADDGWSPWSEWTSCSVTCGNGIQQRGRSCDSLNNRC
EGSSVQTRTCHLQECDKRFKQDGGWSHWSPWSSCSVTCGTGIITRIRLCNSPVPQLNGKP
CEGEARENKPCQKDPCPINGNWGPWSPWDACTVTCGGGLQKRSRLCNNPEPQYGGKTCVG
EARGTQVCNKQDCPIDGCLSNPCFAGATCTSAPDGSWKCGACPAGYHGDGIHCQDIDECK
EVPDACFVFNGVHRCENTEPGYNCLPCPPRFTGTQPFGRSVEDAMTNKQVCKPRNPCTDG
THDCNKNAKCNYLGHFSDPMYRCECKPGYAGNGIICGEDTDLDGWPNENLVCVANATYHC
KKDNCPNLPNSGQEDYDKDGIGDACDNDDDDDGIPDDRDNCPFIYNPQQYDYDRDDVGDR
CDNCPYNHNPDQTDTDNNGEGDACAIDIDGDGVLNERDNCQYVYNVDQRDTDLDGVGDQC
DNCPLEHNPDQEDTDSDLIGDQCDNNQDIDEDGHQNNLDNCPYVPNANQADHDKDGKGDA
CDHDDDNDGIPDDKDNCRLVANPDQADSDGDGRGDACKDDFDQDNVPDIDDICPENVEIS
ETDFRKFQMIPLDPKGTSQNDPNWVVRHQGKELVQTVNCDPGLAVGFDEFNAVDFSGTFF
INTERDDDYAGFVFGYQSSSRFYVVMWKQITQSYWDSTPTKAQGYSGLSIKVVNSTTGPG
EHLRNALWHTGNTPGQVRTLWHDPRHIGWKDFTAYRWRLSHRPKTGYIRVVMYEGKKIMA
DSGPIYDKTYAGGRLGLFVFSQEMVFFSDLKYECRDS
NT seq
3534 nt
NT seq
+upstream
nt +downstream
nt
atggggccagcggctgctctctgcctcctgctcctcgtgctcggcggctcagagaccaag
cgcactgcagagtcgaggaatgatgataacagtgtcttcgatctctttgaactcattggc
ttcatgcggaagggagccgggcgccgggcccccggggtgtacctggtgaagggaccagaa
tcctccagccctgcttaccgcattgaggatgccagtcgcatccctgctgtccctgactcg
aagttccaagacttgttagatgccatccatgctgagaagggcttcattctcctggccact
ctccggcaagccaagaaaagcagaggcaccctgctctccgtggaacagaaagatggctct
ggtcatgtcttcagtctagtgtcaaatggcaaggcaggctccctggacctgagcctttct
gttgatggcaagcagcagttagtgtcagtagaggacgtattgctagctacaggacattgg
aagaatatcaccctgtttgtgcaggaggaccgagctcagctctatgtggggtgtgagaaa
atggagaacgctgaactggacatccccatccagaacatcttcactagggacctggccagc
agtgccaggctccgtattgccaaagggggagtcaatgacaacttccagggtctgctgcag
aatgtgcggtttgtgtttggaactactctggaaactatcctgcggaacaaaggctgttcc
agctccactagtgcaatcattactttggacaaccccatcaatggttccagcccagctatc
cgcactaattacattggccataaaacaaaggacatccaagcagtctgtggattttcctgt
gatgaactgactaatatgtttgtggaactgcaagggctacggtccatggttacaacactt
caagacagagttcgcaaagtgactgaagaaaatgaaatcattgccaaagtagtccaaatc
actcctggagcatgcattcataatggagtcctgcacaaaaataaagaggagtggaccatt
gacagctgcactgaatgtacttgccagaactccgccactatatgccggaaagtgtcctgt
cctctcatgccttgttccaatgccaccgtgcctgatggcgagtgctgccctcggtgctgg
cctagcgactacgcagatgatggatggtctccttggtctgaatggacctcgtgttctgtg
acctgtggtaatgggattcagcagagaggccgttcctgtgacagcctcaataaccgctgt
gaaggctcctctgtgcagactcggacttgccaccttcaggagtgcgataagagatttaaa
caggatggtggctggagtcactggtcgccgtggtcatcatgttctgtcacttgtggcacg
ggcatcatcaccagaattcgtctttgcaactctccagtaccacagctgaatggcaaacct
tgtgagggtgaagcaagagaaaacaaaccctgccagaaagatccttgcccaattaatggc
aactggggaccatggtctccttgggatgcttgcacagtgacatgtggaggaggacttcag
aaacggagccgtctctgcaataatcccgagcctcagtacggtgggaagacttgtgtaggt
gaagctagagggactcaggtctgcaacaaacaggactgtccaattgatgggtgtctgtct
aatccctgctttgcgggggctacgtgcaccagtgcccctgatggttcctggaagtgtggt
gcctgtcctgctggctaccatggtgatggtattcactgccaggatattgatgagtgcaaa
gaggttccagatgcctgctttgtcttcaatggagtgcacaggtgtgagaatactgaacct
ggctacaactgtctgccttgtccaccacgtttcactggaacacagccatttggccgcagt
gttgaggatgccatgactaacaaacaggtctgcaagccacgtaatccatgcacagatgga
acacatgactgcaacaagaatgccaaatgcaattaccttggccactttagtgaccccatg
tatcgctgtgaatgtaaaccaggctatgctggcaatggcatcatctgtggagaagatact
gacttggatggatggccaaatgagaacctggtttgtgttgccaatgctacttaccactgt
aaaaaagataactgccctaatctgcctaactcagggcaggaagactatgataaggatggg
attggtgatgcctgtgacaatgatgatgatgatgatggcattcctgatgaccgggacaac
tgtccattcatctacaacccacagcagtatgactatgacagggatgatgttggtgaccgc
tgtgacaactgtccctacaatcacaaccctgatcaaactgacactgacaacaatggagaa
ggagatgcatgtgcaatagatattgatggagatggggtgcttaatgaaagggacaactgc
cagtatgtctacaacgtagaccagagggatacagacttggatggtgttggagatcaatgt
gataactgtccactggaacacaaccctgaccaggaagacaccgattctgacctcattggt
gatcagtgtgacaacaaccaggacatagatgaagatggccatcaaaacaaccttgataac
tgcccctatgtgcccaatgccaatcaagctgatcatgacaaggatggaaaaggtgatgcc
tgtgaccacgatgatgacaatgatggtatccctgatgacaaagataactgcagactggtt
gccaacccagatcaagctgattctgatggtgatggacgtggagatgcttgcaaagatgac
tttgaccaagacaatgtaccagacattgatgatatctgccctgaaaatgtggaaattagt
gagactgatttccggaaatttcagatgattcccctggatcccaaaggaacatcccaaaat
gatccaaactgggttgttcgtcaccagggtaaagaactggttcagacagtcaactgtgac
cctggccttgcagtcggttttgatgaattcaatgctgtggacttcagtggtaccttcttt
atcaatacagaaagggatgatgattatgctggctttgtatttggctaccaatctagcagt
cgtttctatgtggtcatgtggaagcagatcacccagtcttactgggactccacaccaacc
aaagctcaaggctattcaggtctctccatcaaagttgtgaattccaccactggtccagga
gaacaccttcgtaatgctctgtggcacacaggaaacactcctggccaggtgagaactttg
tggcatgatcctcgtcacataggctggaaagacttcactgcatacagatggcgacttagc
catagaccaaagaccggctacatcagggttgtaatgtatgaagggaagaaaatcatggca
gactcaggaccaatctatgacaaaacctatgctggtggtcggctaggattgtttgtcttc
tctcaagaaatggtgttcttctcagaccttaaatatgaatgcagagattcataa
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