Flavobacterium alkalisoli: FUA48_10265
Help
Entry
FUA48_10265 CDS
T06875
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fak
Flavobacterium alkalisoli
Pathway
fak03030
DNA replication
fak03410
Base excision repair
fak03420
Nucleotide excision repair
fak03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fak00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FUA48_10265 (ligA)
03410 Base excision repair
FUA48_10265 (ligA)
03420 Nucleotide excision repair
FUA48_10265 (ligA)
03430 Mismatch repair
FUA48_10265 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fak03032
]
FUA48_10265 (ligA)
03400 DNA repair and recombination proteins [BR:
fak03400
]
FUA48_10265 (ligA)
Enzymes [BR:
fak01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
FUA48_10265 (ligA)
DNA replication proteins [BR:
fak03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
FUA48_10265 (ligA)
DNA repair and recombination proteins [BR:
fak03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
FUA48_10265 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FUA48_10265 (ligA)
MMR (mismatch excision repair)
DNA ligase
FUA48_10265 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
FUA48_10265 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
PTCB-BRCT
BRCT_2
HNOB
EcoRI
Motif
Other DBs
NCBI-ProteinID:
QEE49949
UniProt:
A0A5B9FUL2
LinkDB
All DBs
Position
2311330..2313327
Genome browser
AA seq
665 aa
AA seq
DB search
MDILQTIQALREELNQHNYNYYVLDNPTISDFEFDIKLKELQELEAKHPEYFDEDSPTQR
VGGSITKNFNTIQHEYRMYSLDNSYSKEELLEWEKRVQKGLGTEDIQYTCELKYDGASIS
ISYENGRLVKAVTRGDGFQGDEVTNNIRTIRAVPIKLKGDYPEKFDIRGEIILPLEGFAK
MNQDLIEIGETPYANPRNTASGSLKLQDSAEVARRPLDCLLYSIIGSNLPIATQFEGLEK
ARQWGFKVPKEAKLAKSIDEVMVFIDYWDTHRHELPYETDGVVIKVNDLHQQEELGYTAK
SPRWAIAYKFKAEQVSTRLNSISYQVGRTGAITPVANLEPVQLAGTTVKRASLHNADQIE
KLDVRVGDEVFVEKGGEIIPKIIAVDFTKRPEDSMPTVYIHQCPECFTELERKEGEAQHY
CPNFYGCPPQIIGRVQHYISRKAMDIEGLGGETVALLYNSDLIENYADLYDLKKEQIVPL
ERMADKSAENLINGIEKSKEIPFERVLYALGIRYVGETVAKKLAKHYKTIDNLAAASLMD
LILVDEIGERIAQSVVDFFANEENRKIIERLKGYGVQLEAVAKEDTTVSDKLAGKTLVVS
GVFEKFSRDELKKAIEDNGGKVGSSISSKTDYVVAGDNMGPAKLEKANKLGVTIISEDDF
IELVK
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggatatccttcagactattcaggcgcttagggaagagcttaatcagcacaattacaac
tactacgtattagacaacccaaccatttccgattttgagtttgacataaaacttaaagaa
ttacaggaactggaagccaaacatcctgaatattttgacgaagattcgcctacacagcgt
gtgggtggcagcattaccaagaattttaataccatacagcatgaataccgaatgtattcg
cttgataattcctattctaaagaagagcttttggaatgggaaaagcgcgtacaaaagggc
ttaggtacagaagatatacaatacacctgtgagcttaaatatgacggagcttccataagt
atatcttatgagaacgggaggttagttaaagctgtaacgaggggagatggttttcagggt
gatgaggtaaccaataatataaggaccattcgtgccgtacctattaagctgaaaggcgac
tatcctgaaaagtttgatattcgtggtgaaatcatacttccgttagaagggtttgcaaaa
atgaaccaggatcttatcgagattggggaaacgccttatgctaatccgcgtaatacggct
tcgggcagtcttaaactacaggacagtgcagaggtggcgagacgacctttagattgcttg
ttgtattcaattataggcagtaacctgccgatagccactcagtttgaaggacttgagaaa
gcacgtcagtgggggtttaaagtgcctaaggaagcgaaactcgctaaaagtatagatgag
gtaatggtttttatagattactgggacactcaccgtcatgaacttccgtatgaaaccgat
ggtgtggtaataaaggtaaacgacctgcatcagcaagaagaacttggctatactgcaaaa
tcgccaagatgggctattgcttataagtttaaggcggagcaggtttctacaaggcttaac
tcgatatcttatcaggtaggccgtacaggggctattactccggttgcaaaccttgagccg
gtacagttggcaggtactacggttaagcgtgcatcgctgcataatgccgaccagattgaa
aaactggatgtgcgtgtgggtgatgaggtttttgttgaaaaaggaggtgagattatccct
aagattatagctgtcgattttaccaaaagacctgaggattctatgcctacggtttatata
caccagtgtccggaatgttttactgaactggaacgtaaggaaggcgaagcacagcattac
tgccctaatttttacggatgccctccgcaaattataggcagggtacagcattatatttcg
cgtaaagcgatggatatagaaggcctgggaggtgaaactgttgctttactgtataactca
gatctaattgaaaactatgccgacctatacgaccttaaaaaggaacagattgttccgtta
gagcgtatggcagataaatcggcagagaaccttataaacggtattgaaaagtcgaaagag
attccgtttgagcgtgtactgtatgctttaggtatacgctatgtaggggagacagttgct
aaaaaactggcaaaacattataagactatagataatcttgcggcagcatcgttaatggat
cttattcttgtagatgagataggtgagaggatagctcagagtgtggttgatttttttgca
aacgaagagaaccggaagattatagaacgccttaaaggttatggtgttcagttggaagca
gtagctaaagaagataccacagtgagcgataagcttgcgggtaaaacattagtggtttcg
ggagtgtttgagaaattctcgcgcgacgaacttaaaaaggctatagaagataacggcggt
aaagtgggtagttccatttcctctaaaaccgattatgtggtggcgggagacaatatgggg
cctgccaagctggaaaaagccaataaactgggagttaccataataagtgaagacgatttt
atagagcttgtaaaataa
DBGET
integrated database retrieval system
