Flavobacterium ammoniigenes: GENT5_14880
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Entry
GENT5_14880 CDS
T08752
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fan
Flavobacterium ammoniigenes
Pathway
fan03030
DNA replication
fan03410
Base excision repair
fan03420
Nucleotide excision repair
fan03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fan00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
GENT5_14880 (ligA)
03410 Base excision repair
GENT5_14880 (ligA)
03420 Nucleotide excision repair
GENT5_14880 (ligA)
03430 Mismatch repair
GENT5_14880 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fan03032
]
GENT5_14880 (ligA)
03400 DNA repair and recombination proteins [BR:
fan03400
]
GENT5_14880 (ligA)
Enzymes [BR:
fan01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
GENT5_14880 (ligA)
DNA replication proteins [BR:
fan03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
GENT5_14880 (ligA)
DNA repair and recombination proteins [BR:
fan03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
GENT5_14880 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GENT5_14880 (ligA)
MMR (mismatch excision repair)
DNA ligase
GENT5_14880 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
GENT5_14880 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
BRCT_2
PTCB-BRCT
EcoRI
DNA_ligase_A_M
Motif
Other DBs
NCBI-ProteinID:
BDB55183
LinkDB
All DBs
Position
1652654..1654651
Genome browser
AA seq
665 aa
AA seq
DB search
MDIQNTIQNLREELNQHNHNYYVLDQPTISDYEFDLKLAQLQDLENQHPQFFDESSPTQR
VGGAITKNFETVPHEHRMYSLDNSYSKEDLLEWEKRIQKVLGEVPLEYTCELKYDGASIS
ITYENGKLKRAVTRGDGFQGDDVTNNIKTIKSVPLQLKGNYPPKFDVRGEIILPFTGFEK
MNQELIEIGETPYSNPRNTASGSLKLQDSTEVAKRPLDCLLYFLIGNQLPFNSQFESLES
ARSWGFKAPKEAKLANNLEEVFQFIDYWDTHRHNLPYETDGVVVKVNSFQYQEELGYTAK
SPRWAIAYKFKSEQVATRLNSISYQVGRTGSITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRVGDTVFVEKGGEIIPKIIAVDVAQRDLFAEPTSYITHCPECQTELVRIEGEANHY
CPNFYGCPPQIIGRIQHYISRKAMDIEGLGGETVALLFNNGLVRNYADLYELKVEQILPL
ERMAQKSAENLVNGVSLSKNIPFERVLFALGIRYVGETVAKKLAKHYKNIDALRQASLMD
LILVDEIGERIAQSVIDFFDNQDNQMIVDRLKNYGIQFELVEKFNPNATDKLEGKTFVVS
GVFTLFSRDELKQAIEDNGGKVGSSISAKTDYVVAGDNMGPAKLDKANKLNIPIITEEDF
KTMIS
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggacattcaaaataccattcaaaacttacgagaggaactcaatcaacacaatcataat
tattatgtgttagaccagcctactatttcggattatgagtttgatttgaaattggcacaa
ttacaagatttagaaaatcaacaccctcagttttttgatgagagttcgcctacgcaacgt
gtcggtggggcaattaccaagaattttgaaacagttccacacgaacatcgcatgtactct
ctagataattcctattcgaaagaagatttactagaatgggaaaaacgaattcaaaaagtg
ttgggagaggtacctttggaatacacttgcgagctaaagtatgatggtgcctctatcagt
attacctacgaaaacggaaaattgaaacgagcagtgactcgtggcgatggatttcaagga
gatgatgtgactaataatataaaaaccattaaatcggttccattgcaattgaaaggaaat
tatcctcctaaatttgatgtgcgtggagagattattttgccttttacaggttttgaaaaa
atgaaccaagagttgattgaaattggagaaactccctattcaaatccaaggaataccgca
tcgggaagtttaaaattgcaagacagtaccgaagtggccaagcgccctttggattgtttg
ctgtattttctaattggtaaccaactgccatttaattcgcaatttgaaagtttagaatct
gcaagatcttggggatttaaagcgcctaaagaagcgaagctagctaataacttagaagaa
gtgtttcaatttatagactattgggatacgcaccgtcataatttgccgtacgaaacagac
ggagtagtagtgaaggtaaattcctttcaataccaagaagaattagggtatacggccaaa
tcacctcgttgggccatcgcctataaatttaagtcggagcaagtagctacacgtttgaat
tctatttcctatcaagtgggtagaacaggttcgattacacctgtggccaatttggaaccg
gtacaattggctggaactattgtgaaacgcgcttcgttgcacaatgcggaccaaatagaa
aaattagatattcgtgttggagacaccgtttttgttgaaaaagggggtgaaattattccc
aaaatcattgcggtagatgtggcacaacgtgatttatttgctgagccaactagctatatt
acacattgtccggaatgtcaaaccgaattagttcgtattgaaggagaggccaatcattat
tgccctaatttttacggctgtccgccgcagattattggtagaattcaacactatatttca
agaaaagcaatggatattgaagggcttggaggcgaaacggtagccttgttattcaataat
ggattggttcgtaattatgctgatttgtatgaattgaaagtagaacagattttgcctttg
gaacgaatggctcagaaatcggcagagaatttagtcaacggggtttcactttctaaaaat
atcccttttgagcgcgtattgtttgcattaggaatccgttatgttggagaaacagttgcc
aaaaaattagccaagcattataaaaatatcgacgcccttcgtcaagctagtttgatggac
ttgattttggttgacgaaataggggagcgcattgcacaaagcgtcattgatttttttgac
aatcaagacaatcaaatgatagtcgatcgacttaaaaactatggtattcaatttgaactt
gtagaaaaatttaaccccaatgcgactgataaattggaaggtaaaacctttgtagtatcg
ggagtatttactttattttctagagacgaattaaaacaagctattgaagacaatggtgga
aaagtgggaagttctatttcagctaaaactgattatgtagtagcaggtgataatatgggg
ccagccaaattagataaggcgaataaactgaacattccgattataactgaagaggatttc
aaaacgatgatttcttaa
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