Flavobacterium ammonificans: SHINM13_15670
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Entry
SHINM13_15670 CDS
T08737
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fao
Flavobacterium ammonificans
Pathway
fao03030
DNA replication
fao03410
Base excision repair
fao03420
Nucleotide excision repair
fao03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fao00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
SHINM13_15670 (ligA)
03410 Base excision repair
SHINM13_15670 (ligA)
03420 Nucleotide excision repair
SHINM13_15670 (ligA)
03430 Mismatch repair
SHINM13_15670 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fao03032
]
SHINM13_15670 (ligA)
03400 DNA repair and recombination proteins [BR:
fao03400
]
SHINM13_15670 (ligA)
Enzymes [BR:
fao01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
SHINM13_15670 (ligA)
DNA replication proteins [BR:
fao03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
SHINM13_15670 (ligA)
DNA repair and recombination proteins [BR:
fao03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
SHINM13_15670 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
SHINM13_15670 (ligA)
MMR (mismatch excision repair)
DNA ligase
SHINM13_15670 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
SHINM13_15670 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
BRCT_2
PTCB-BRCT
zf-C4_Topoisom
Motif
Other DBs
NCBI-ProteinID:
BDB57271
LinkDB
All DBs
Position
1809796..1811793
Genome browser
AA seq
665 aa
AA seq
DB search
MDIHITIQNLREELHQHNHNYYVLDNPTISDYEFDLKLAQLQELETQHPEFYDESSPTQR
VGGAITKNFETVVHEHRMYSLDNSYSKGDLIEWEKRIQKVLGEVPLEYTCELKYDGASIS
ITYVNGKLDRAVTRGDGFQGDDVTNNIKTIKSVPLQLKGNYPPKFDIRGEIILPFAGFEK
MNQELIEIGETPYSNPRNTASGSLKLQDSKEVAKRPLDCLLYYLIGNQLPFNSQFESLES
ARAWGFKAPKEARLASNLEEVFEFIAYWDTHRHNLPYETDGVVVKVNSFQHQEELGYTAK
SPRWAIAYKFKSEQVATRLNSISYQVGRTGAITPVANLEPVQLAGTIVKRASLHNADQIE
KLDIRVGDTVFVEKGGEIIPKIIAVDLAQRPLFTDPTQYITHCPECQAELVRIEGEANHY
CPNFYGCPPQIIGRIQHFISRKAMDIEGLGGETVALLFNNGLVHNYADLYELKVEQILPL
ERMAQKSAENLVYGVALSKTIPFERVLFALGIRYVGETVAKKLAKHYKNIDALRQAGLMD
LILVDEIGERIAQSVIDFFDNQENKIIIERLKNYGIQLEIVEKINPNATDKLEGKTFVVS
GVFSLYSRDELKQAIEDNGGKVGSSISAKTDYVVAGDNMGPAKLDKANKLNIPIISEEDF
QQLVN
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggacattcatattacaattcaaaacttacgagaggaattacaccaacacaatcataat
tactatgtgttggacaatccaactatttcggattatgagtttgatttgaaattggcccaa
ttacaagaattagaaacgcaacaccctgaattttacgacgaaagttcgcctacacaacgt
gttggaggagcaattactaagaatttcgaaacggttgttcacgaacatcgaatgtattct
ttggataattcgtattccaaaggagatctaatcgaatgggaaaaacgaattcaaaaagta
ctgggagaagtacctttggaatatacgtgtgagttgaagtacgacggagcttcgattagt
attacctatgtaaacggaaaactagatcgggctgtcactcgtggagatggttttcaggga
gatgatgtgacgaataatatcaaaaccattaaatcagttccgttacaactaaaagggaac
tatcctccaaagtttgacatacgcggtgaaattattttgccatttgccggttttgaaaaa
atgaatcaagagttgattgaaataggtgaaacaccctattccaatccaagaaataccgct
tctggaagtttaaaattacaagatagcaaagaagtggcaaagcgtccattggattgcttg
ttgtattatttaattggcaatcaattgcctttcaattctcaatttgaaagtttagagtcg
gcaagagcttgggggtttaaagcgcctaaagaagcgaggttggctagtaatttagaagaa
gtgtttgaatttatagcctattgggatacgcaccgtcataatttaccttatgaaacggat
ggcgtagtggtaaaggtaaattcatttcagcaccaagaagaattaggctatactgcgaaa
tcgcctcgttgggctatagcttataaatttaagtcggagcaggttgctactcgtttgaat
tcaatatcttatcaagtaggacgtacaggagcaataacacctgtcgctaatttggaacct
gtgcaattggccggaactattgtgaagcgtgcttcgttgcacaatgctgatcaaattgaa
aaattagacattcgggtgggagatactgtttttgttgaaaaaggcggagaaattattcct
aaaattatcgctgtagatttggcgcaacgcccattgtttacagatccaacgcagtatata
acacattgcccagaatgtcaagctgaactggtacgtattgagggagaagccaatcattat
tgtcctaatttttatggctgtcctccacagattattggtcgaattcagcattttatttcc
agaaaagcaatggatattgaaggacttggtggagaaacagtggctttattattcaataat
ggcttggttcataattatgccgatttatatgaactcaaagtggagcaaatcttgccattg
gaacgaatggcacagaaatctgcggaaaatttagtttatggtgtagcactttctaaaact
attccttttgagcgtgtattgtttgctttaggcattcggtatgtgggagaaaccgtagcg
aagaaattagccaaacattataagaatatagacgctttacgtcaagccggtttgatggat
ttaattttggttgacgaaataggagagcgtattgctcaaagtgttattgacttttttgac
aatcaagagaataagattattattgaaagattaaaaaactacggtattcagcttgaaatc
gtagaaaaaataaacccaaatgctaccgataaattagaaggaaaaacctttgtagtttcg
ggagttttttcactgtattcaagagatgaattgaaacaagccattgaagataatggagga
aaggtaggaagttctatctcagctaaaactgattatgttgtagcaggcgacaatatggga
ccagccaaactagataaagccaacaaacttaatattccaattatctcagaggaagatttt
caacaattagtaaactaa
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