Fictibacillus arsenicus: ABE41_001440
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Entry
ABE41_001440 CDS
T04452
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
far
Fictibacillus arsenicus
Pathway
far03030
DNA replication
far03410
Base excision repair
far03420
Nucleotide excision repair
far03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
far00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABE41_001440 (ligA)
03410 Base excision repair
ABE41_001440 (ligA)
03420 Nucleotide excision repair
ABE41_001440 (ligA)
03430 Mismatch repair
ABE41_001440 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
far03032
]
ABE41_001440 (ligA)
03400 DNA repair and recombination proteins [BR:
far03400
]
ABE41_001440 (ligA)
Enzymes [BR:
far01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABE41_001440 (ligA)
DNA replication proteins [BR:
far03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABE41_001440 (ligA)
DNA repair and recombination proteins [BR:
far03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABE41_001440 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABE41_001440 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABE41_001440 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABE41_001440 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
HHH
PTCB-BRCT
RNA_pol_A_CTD
5_3_exonuc
Spectrin
Motif
Other DBs
NCBI-ProteinID:
ANX10676
UniProt:
A0A1B1YZQ9
LinkDB
All DBs
Position
242392..244398
Genome browser
AA seq
668 aa
AA seq
DB search
MNEEHAKERILELRELLEKYNYEYHVLDKPSVPDAEYDQLMKELIELENNHPELHDDHSP
TSRVGGAILDFFEKVEHTVPMLSLGNAFNDQDLRDFDRRVRDGVGDNVTYVAELKIDGLA
VSLLYEDGRFVRGATRGDGTIGEDITNNLKTIRSIPFRLKDPVRLEVRGEAFMPKKSFQK
LNAHREEEGQELFANPRNAAAGSLRQLDPKIAASRNLDIFVYGVGKLEGHSVDSHDESLT
YLSHLGFKTNAEWKKCDNIDEVIEYVNGWQEKRPDLPYEIDGIVIKVNSLYQQEELGFTA
KNPRWAIAYKFPAEEVVTKLEGIELNVGRTGVVTPTALLQPVLVAGTTVKRASLHNEDLI
REKDIKIGDYVVVKKAGDIIPEVVNVITERRTGDETDFNMPTECPECESKLERLDGEVAL
RCINPQCPAQIREGFIHFVSRNAMNIDGLGEKVVAQLFKEKLIDNVADLYKLEREKLLEL
ERMGEKSADNLLAAIEKSKENSLERLLFGLGIRHVGAKAAKTIAQRFETMETLMAATKEE
LLEVEEIGEKMADSIQLYFSKPEVKELMEELQSLGVNMTYKGPKLIKVEDLDTPFAGKTV
VLTGKLSILTRNDAKEKLERLGAKVTGSVSKNTDMLIAGEDAGSKLDKAKKLGIDIWDEQ
QLVDELNK
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
ttgaacgaagaacacgcgaaggaaagaatcctggagctccgggagcttttagaaaaatac
aattacgaatatcatgtactggacaaaccgtctgtacctgatgctgaatatgaccagctt
atgaaagagctgatcgaactcgagaataatcatcctgaactccatgacgatcattcgcct
acatcacgtgtaggcggtgccattttggacttttttgaaaaagttgaacacactgttccg
atgctaagcctgggaaatgcattcaatgatcaggaccttcgtgattttgaccgccgtgta
cgcgatggggtcggtgataacgtgacatatgttgccgagcttaaaatcgatgggcttgcc
gtttctcttctttatgaggatggaaggtttgtaagaggtgcaacccgtggcgacggtaca
attggtgaggacattacgaacaatttaaagacaattcgttccattccatttaggctgaaa
gatcctgttaggctcgaagtgcgcggagaggcgttcatgccaaagaaatcattccagaag
ctaaacgctcaccgtgaagaagaaggacaggagctttttgcgaatccaaggaatgccgca
gcaggttcattgcgtcagcttgatccgaagattgcagctagccgaaaccttgatattttc
gtttatggagtaggaaaacttgaaggtcactcggtagattctcatgatgagagcttaact
tatttgagtcacttaggtttcaaaacgaatgctgagtggaaaaaatgcgataacattgat
gaagtgatcgagtacgtgaacggctggcaggagaagcgtcctgatcttccgtacgaaatc
gatggcatcgtaattaaagttaactcgttatatcagcaagaagaattagggttcactgcg
aaaaatccacgttgggcgatcgcgtacaagtttccggctgaggaagttgttacaaagctt
gaaggaatcgaacttaacgtcggccgtacaggtgtggttacaccaacggcattgcttcag
cccgttttagtagctggaacgacagtcaaacgcgcttcattacataatgaagatctgatt
cgcgaaaaagacattaaaattggtgactatgttgttgtgaaaaaagcgggagacattatc
cctgaagtagttaacgttataacagagcgcagaacaggagacgaaacggatttcaatatg
ccgacagaatgcccagagtgtgaaagcaagctcgagcgtttggacggcgaagtggcactt
cgctgcataaatccacaatgtccggcacagatccgtgaaggtttcattcattttgtatca
agaaacgcgatgaatattgacgggcttggggaaaaagtagtcgcacagctttttaaagaa
aaactcattgataatgttgcagatttatataagcttgagcgtgaaaaactgttagaatta
gagcgtatgggtgaaaaatctgcagacaatctgcttgcagcgatcgagaaatcaaaagaa
aactcattagagcgtcttcttttcggactcggaatccgtcatgtaggagcaaaggcggct
aagacgattgctcagcgctttgaaacgatggaaacattgatggccgcaacgaaagaagaa
cttttagaagtagaagaaatcggtgaaaagatggctgattctattcaattatacttctcg
aagcctgaagtgaaagaactgatggaagaattgcagagccttggtgtgaacatgacatac
aaagggccaaagctcattaaagttgaagatctggacacgccgtttgcagggaagaccgtt
gttcttactggaaagctgtccattttgacacgtaatgatgcaaaagaaaaattggagcgc
ctaggtgcaaaagtgaccggaagcgtgagtaaaaatacagatatgctgatcgcaggggaa
gatgcaggttctaagcttgataaggcaaagaagcttggcattgatatctgggatgaacag
caattggttgatgagctcaacaaataa
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