Frateuria aurantia: Fraau_2006
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Entry
Fraau_2006 CDS
T01773
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
fau
Frateuria aurantia
Pathway
fau03030
DNA replication
fau03410
Base excision repair
fau03420
Nucleotide excision repair
fau03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
fau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Fraau_2006
03410 Base excision repair
Fraau_2006
03420 Nucleotide excision repair
Fraau_2006
03430 Mismatch repair
Fraau_2006
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
fau03032
]
Fraau_2006
03400 DNA repair and recombination proteins [BR:
fau03400
]
Fraau_2006
Enzymes [BR:
fau01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Fraau_2006
DNA replication proteins [BR:
fau03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Fraau_2006
DNA repair and recombination proteins [BR:
fau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Fraau_2006
NER (nucleotide excision repair)
GGR (global genome repair) factors
Fraau_2006
MMR (mismatch excision repair)
DNA ligase
Fraau_2006
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Fraau_2006
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
Nlig-Ia
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
AFC86390
UniProt:
H8L2N1
LinkDB
All DBs
Position
complement(2127668..2130085)
Genome browser
AA seq
805 aa
AA seq
DB search
MPNAPVTTEPGSADPQVLQQRLIALRQQLDDASHRYYVLDDPTLPDADYDRLLRELEAIE
RVHPEWVTADSPSQRVGSKLIGGFAEVRHAVPMLSLNNAFEQEGDTDRERYVEVADFVRR
VESALDRSQPVFSVEPKLDGLAISLRYVDGQFVGGATRGDGETGEDVTANLRTIRSIPLK
LRGEGWPRRLEVRGEVVMLRKDFDQFNAAALERGEKPLANPRNGAAGSLRQLDPAVTARR
RLSFFAYAVGQVEDGDLPATHSATLQQLREWGFPVSPEVATAKGFEGLLAYFRRIGAERD
QLPYDIDGVVYKLDDYAGQQAMGFVARAPRWAIAHKFPAQEQSTRVLAIEIQIGRTGAAT
PVARLEPVSVGGVVVTNATLHNADQVARLDVRVGDSVIVRRAGDVIPEVVRVIPEQRVAD
TQVWAMPRHCPVCGSALLREDGAAAWRCSGGLFCPAQRKEALIHFASRRAMDIEGLGERF
VDALVEFDYVKTPADLYHLQLQDLLDMKRRADERDGSTPETVRSGKIATRWAENLLAGID
GSRHTSLSRFLFALGIMHIGSNTAKTLADWLGSLERIRTQPEAILRLLPDIGTEVARSIA
GFFQQEGNQQVVDRLLAAGIRFNDETTPDPRLRERLGLSALLNGAGIAKLGPKSVELLVR
HFSSLEAIQAGGYNHWLTAGVPAAAAKALETRLADRGGLEALQQAEQAMHALLAAIPASA
KVASLPLDGMSFVLTGTLHSMSRDQARERLEAFGAKVSGSVSKKTSVVVAGEAAGSKLDK
ATELGLEIWDEARLQAFLSEQGVSA
NT seq
2418 nt
NT seq
+upstream
nt +downstream
nt
atgcccaacgcccccgtcaccaccgagcctggatctgccgatccgcaggtcttgcagcag
cgactgatcgctttgcgccagcagctggacgatgccagccatcgttactacgtgctcgat
gatccgaccctgcccgatgctgactatgatcggctgctgcgtgagcttgaagcgatcgag
cgcgttcatcccgagtgggtgactgccgattcgccgtcacagcgcgtcggcagcaagctg
atcggcggtttcgccgaagtccgtcatgcggtgccgatgctgtcgctcaacaatgctttc
gagcaggagggtgataccgatcgtgagcgctatgtcgaagtggccgatttcgtccgtcgt
gtcgagtccgcgctggaccgctcgcagccagtgttttcggtggagcccaagctggatggg
ctggccatcagcctgcgctatgtcgatgggcaattcgtcggcggcgccactcgtggcgat
ggcgagaccggcgaggatgtcaccgccaatctgcgcaccatccgctcgattcccctgaaa
ctgcgcggcgaaggctggcccaggcggctggaagtgcgtggcgaagtggtgatgctgcgc
aaggatttcgaccagttcaacgcggctgccctggagcgtggtgaaaagccgcttgccaat
ccccgcaatggtgccgccggttcactgcggcagctggaccccgcggtgaccgcgcgtcgt
cggttgagctttttcgcctatgcggtgggtcaggtcgaggacggcgatctgccggccact
cattcggcgaccttgcagcagctgcgtgaatggggttttccggtgtcgcccgaagtcgcc
acggccaagggcttcgaggggctgctggcctatttccggcggatcggtgccgaacgggat
cagctgccttacgatatcgatggcgtggtctacaagctggacgattatgccggccagcag
gccatgggcttcgtggcccgtgcgcctcgctgggctatcgcccacaagttcccggcccag
gagcagagcacccgggtactggccatcgagatccagatcggtcgcaccggcgcagcgaca
ccggtggcgcggctggagccggtctcggtcggtggggtggtggtcaccaatgccaccttg
cacaatgccgaccaggtggcgcgactggatgtgcgcgtcggtgacagcgtcatcgtgcgt
cgcgccggggacgtgattcccgaggtggtgcgggtcattcccgagcagcgcgtggccgat
acccaggtctgggccatgcctcgccactgcccggtctgcggttcggcgctgctgcgggaa
gacggcgcggcagcctggcgctgcagtggcggcctgttctgcccggcgcagcgcaaggag
gcgctgatccatttcgcctcgcgacgcgccatggatatcgaaggtctgggcgagcgtttc
gtcgatgcgctggtggaattcgattacgtcaagacgccggccgatctttaccatctgcag
ctgcaggatctgctggacatgaagcggcgagccgacgagcgcgacggcagcacgcctgaa
acggtcaggagcggcaagatcgcgacccgttgggccgagaatctgctggccggtatcgac
ggcagtcgtcataccagtctgtcgcgcttcctgttcgcgctcggaatcatgcatatcggc
agcaacacggcgaagactctggccgattggctgggcagcctggagcgtatccggacccaa
cccgaggcgatattgcgtctgctgccggatatcggcaccgaggtggcgcgctcgatcgcc
ggattcttccagcaggaaggcaatcagcaggtggttgaccgtctgctggccgcgggtatc
cgcttcaacgacgaaacgacgccggatccgcgcctgcgtgagcgtctgggtctttcggcc
ttgttgaatggcgcgggcatcgccaagcttgggccgaagagcgtagagctgctggttcgg
catttttccagtctggaggcgatccaggccggtggctacaaccactggctgacggcaggc
gtgcctgcggcagcggccaaggcgctggaaacgcggctggccgatcggggcggtctggaa
gccttgcagcaggcggagcaggcgatgcacgccctgctggcggcgattccggcatcggcc
aaggtggcaagcctgcccctggatggcatgagtttcgtgctgacgggtacgctgcactcc
atgtccagggatcaggcacgggaaaggctcgaagccttcggcgccaaggtgtccggctcc
gtctcgaaaaagacctccgtggtggtggcaggcgaggcggccggctccaagctggacaag
gccaccgaactgggcctcgagatctgggacgaggcccggttgcaggcctttctctccgag
cagggcgtatcggcatga
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