Flagellimonas aurea: ABWH94_11560
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Entry
ABWH94_11560 CDS
T11242
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
faw Flagellimonas aurea
Pathway
faw03030
DNA replication
faw03410
Base excision repair
faw03420
Nucleotide excision repair
faw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
faw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABWH94_11560 (ligA)
03410 Base excision repair
ABWH94_11560 (ligA)
03420 Nucleotide excision repair
ABWH94_11560 (ligA)
03430 Mismatch repair
ABWH94_11560 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
faw03032
]
ABWH94_11560 (ligA)
03400 DNA repair and recombination proteins [BR:
faw03400
]
ABWH94_11560 (ligA)
Enzymes [BR:
faw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABWH94_11560 (ligA)
DNA replication proteins [BR:
faw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABWH94_11560 (ligA)
DNA repair and recombination proteins [BR:
faw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABWH94_11560 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABWH94_11560 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABWH94_11560 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABWH94_11560 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
BRCT_2
HHH
Auto_anti-p27
DED
Zn_ribbon_Top1
Motif
Other DBs
NCBI-ProteinID:
XHC20745
LinkDB
All DBs
Position
2577214..2579214
Genome browser
AA seq
666 aa
AA seq
DB search
MNIEQQIQSLREELREHNYKYYVLDEPSISDYEFDTKLKELQKLEAEHPEFKDPTSPTLR
VGGMVTKNFETVVHDHRMYSLDNSYSKEDLEDWEKRIQRILGDAEVEFTCELKYDGASIS
LTYENGLLVKAVTRGDGFQGDDVTNNIKTIKSVPLQLKGDYPPKFDIRGEIILTLEGFAK
MNAERVEAGEDAYMNPRNTASGSLKLQDSALVAQRPLECLLYSIAGDNLGVSSQFEVLEK
ARSWGFKVPTVAKLCKSTAEVMQFADYWEVHRHDLPYETDGVVVKVNSIQQQEELGYTAK
SPRWAMAYKFKAEQATTILNKITYQVGRTGAITPVANLEPVLLAGTTVKRASLHNADQIA
KLDVREGDTVFVEKGGEIIPKIVKVDFTKRSVDSEPTKYIENCPECGTELIRKEGEAQHF
CPNDIGCPPQITGRIQHFISRKAMDIEGLGGETVELLFKEGLIGNYADLYTLTKEQILPL
ERMADKSAENLVNGVQASKAIPFERVLFALGIRYVGETVAKKLAKAFKNIDALMAASQEQ
LVAVDEIGERIAESVVSFFSEPANVETIDRLKSYGLQFSLSEAQLENQTELLKGNTFVIS
GVFETISRNDLKKLIEDNGGKVSSSISSKTSFLVAGDNMGPSKRTKAEGLGVPIISEQEF
LEKLEP
NT seq
2001 nt
NT seq
+upstream
nt +downstream
nt
atgaacattgagcaacaaatacaatcgctaagggaagagctaagagaacacaactataaa
tactatgtgctcgatgagccgtctatttccgattacgagtttgacacgaaactcaaggag
cttcagaaactggaagccgaacatcccgaatttaaggacccgacgtcgccaaccttgcgc
gtgggagggatggtcaccaaaaattttgagacggttgttcacgaccatcggatgtattcg
ttggacaattcgtactccaaggaggacttggaggattgggagaagcggattcagcgtatt
ttgggagatgccgaagtggagtttacttgtgaattaaagtatgatggggcttccatcagt
cttacctacgaaaatgggcttttggtcaaagcagtgacccgtggtgatggttttcagggg
gatgatgtgaccaataacatcaagaccataaaatcggttcccttgcaattgaagggagac
tatccaccgaagtttgatattcgaggggaaatcatactcaccctcgagggctttgccaaa
atgaacgcagagcgtgttgaagcgggggaagatgcttacatgaatccgaggaacacggca
tcaggcagtttaaaacttcaagatagtgccttggtggcccaacgccccttggaatgtttg
ttgtacagcatagctggcgacaatttaggcgtttcatcccagtttgaagtactggaaaaa
gcgcgctcttggggattcaaagtgccgactgtcgccaaattgtgtaaatccaccgcagag
gttatgcagtttgcggattattgggaggtacaccgtcacgatttgccctacgaaaccgat
ggcgtagtggtgaaggtgaacagcattcaacagcaagaggagctggggtataccgcaaaa
tccccgcgctgggccatggcctataaatttaaggcggaacaggccactaccattttgaac
aagattacgtatcaagttgggcgtactggggcgattacccctgtggccaacttggaacct
gtattgttggcgggaactacggtgaaacgagcttcgttgcacaatgccgaccaaattgcc
aaactcgatgtgcgcgaaggtgacactgtttttgtggaaaagggaggagaaatcatcccc
aagatcgtaaaggtagattttaccaagcggtcagttgattccgaacccacaaaatacatt
gaaaattgtcccgaatgtggcacggagcttatcagaaaggaaggagaggcacagcatttt
tgcccgaatgacatcgggtgtccacctcagattacgggtcgaatccaacactttatctct
agaaaggccatggatattgaaggattaggaggcgaaaccgtagaattactgttcaaggaa
ggccttattggtaactacgccgatctgtacaccttgaccaaagaacaaatattgccgttg
gagcggatggctgacaaatctgccgaaaacttagtgaacggagtacaggcatccaaagcc
attccgtttgaacgggtgctttttgccctggggataagatatgttggggagacggtggcc
aaaaaactggccaaagctttcaagaatattgatgctttaatggcagcttcacaagagcaa
ttggtggcggtagacgagataggggaacggattgccgaaagtgtggtcagctttttctcg
gagcccgcgaatgtggaaactatcgaccgattaaaatcatatggactacaattctcgttg
tccgaagcgcagttggaaaatcaaacggaacttttgaaaggaaatacgtttgtgatttcg
ggtgtgttcgagaccatcagccgtaacgacctaaagaaattgattgaagataacggaggt
aaagtgtcttcctccatttcatcaaaaaccagcttcttggtggcaggagacaatatgggc
ccaagtaaacgtaccaaggcggaaggtttgggagtacccatcatatcagaacaggaattt
ttggaaaaattggaaccatga
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